BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA05FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1710 1578 0.0
>3x_Contig1710
Length = 16151
Score = 1578 bits (796), Expect = 0.0
Identities = 834/843 (98%), Gaps = 3/843 (0%)
Strand = Plus / Plus
Query: 86 cgcatggcttgcaataattctgaattttgcctggccattcaatcatcctccatatagcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cgcatggcttgcaataattctgaattttgcctggccattcaatcatcctccatatagcga 1080
Query: 146 gaatttttgttattcaatcgctattgactgctgctaaacgtacatgctctcgcattacgt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaatttttgttattcaatcgctattgactgctgctaaacgtacatgctctcgcattacgt 1140
Query: 206 aactgcaacagttgatatacttagttcaagatgtgcattctcgttatgccccgtatgagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aactgcaacagttgatatacttagttcaagatgtgcattctcgttatgccccgtatgagc 1200
Query: 266 atggtttctcttcgacagtgtcacaaccgtgacaatgatatcggaaagattagaatagca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atggtttctcttcgacagtgtcacaaccgtgacaatgatatcggaaagattagaatagca 1260
Query: 326 acttctccgctcagttaacgcatacacgcttttgctctggaacgtttcgaatattctgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 acttctccgctcagttaacgcatacacgcttttgctctggaacgtttcgaatattctgtc 1320
Query: 386 gattcggtacactcgttacacttttttttccagggaaagtcgcatctcttccaaatttag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 gattcggtacactcgttacacttttttttccagggaaagtcgcatctcttccaaatttag 1380
Query: 446 ttcgattatttctaatcctaattcaattcgttgtggtaacagcggcggcagcttgtctcg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttcgattatttctaatcctaattcaattcgttgtggtaacagcggcggcagcttgtctcg 1440
Query: 506 acctttcgaaatattgattcggatgtactatctgcaaatcagccgtagtagtcttgtgaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 acctttcgaaatattgattcggatgtactatctgcaaatcagccgtagtagtcttgtgaa 1500
Query: 566 ctgcttcgaatactttggtacaagcgatggtgtaatcttgttgttggcatgattctacca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ctgcttcgaatactttggtacaagcgatggtgtaatcttgttgttggcatgattctacca 1560
Query: 626 cactattgacctgttgttgcgttaaggacatctctttcagcgtcgcaactaatttatccg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 cactattgacctgttgttgcgttaaggacatctctttcagcgtcgcaactaatttatccg 1620
Query: 686 gatggtaatctctgtaaggacatccatggtactctcctctactgggcctaggcttggaaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 gatggtaatctctgtaaggacatccatggtactctcctctactgggcctaggcttggaaa 1680
Query: 746 gaa-tgtacngcagtcccatggcttat-attaattctgttaccttcaagaccat-attgt 802
||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1681 gaattgtacggcagtcccatggcttataattaattctgttaccttcaagaccataattgt 1740
Query: 803 gacggaaattatacttatattctttgttgaactgatctacagtcatctttccaccaaaag 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1741 gacggaaattatacttatattctttgttgaactgatctacagtcatctttccaccagaag 1800
Query: 863 tgaacgattccgtccagaatttgcatgcctcggctacagacagaccgatacctttcaaga 922
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 1801 tgaacgattccgtccagaattgcaatgcctcgtctacagacagaccgatacctttcaaga 1860
Query: 923 aaa 925
|||
Sbjct: 1861 aaa 1863
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5288
Number of Sequences: 1807
Number of extensions: 5288
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)