BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1275 0.0
>3x_Contig1345
Length = 7291
Score = 1275 bits (643), Expect = 0.0
Identities = 706/717 (98%), Gaps = 8/717 (1%)
Strand = Plus / Plus
Query: 89 caattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttcccct 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 caattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttcccct 2337
Query: 149 caagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaactaaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 caagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaactaaa 2397
Query: 209 gataaagatggttacgaagttactaaatcaatgaataaaaagttaaaaaaacaatggttg 268
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 gataaagatggtaacgaagttactaaatcaatgaataaaaagttaaaaaaacaatggttg 2457
Query: 269 gctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgcttttac 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 gctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgcttttac 2517
Query: 329 taattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgtat 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 taattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgtat 2577
Query: 389 tgagtttatgcaaatg-aagatcttaaatttttttctttttgttaacgaattcttaagta 447
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 tgagtttatgcaaatgcaagatcttaaatttttttctttttgttaacgaattcttaagta 2637
Query: 448 tcttacaattagcatattttatttctttattgggatgattgactactatatattataagc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 tcttacaattagcatattttatttctttattgggatgattgactactatatattataagc 2697
Query: 508 tataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgtact 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 tataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgtact 2757
Query: 568 aagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaattga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 aagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaattga 2817
Query: 628 tcctttcttttgctcgtgntcagtggaaatgctttcagaggtttagcggagtgtgaggac 687
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 tcctttcttttgctcgtgttcagtggaaatgctttcagaggtttagcggagtgtgaggac 2877
Query: 688 gaaat-gcactagctg-aaacgangccgagttgtataagattaaac-tatggctcctg-t 743
||||| |||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
Sbjct: 2878 gaaatggcactagctgaaaacgaggccgagttgtataagattaaacttatggctcctgtt 2937
Query: 744 tttgataaaagagataagtt-atcgagaagattccg-tctttt-gaatatcgcttta 797
|||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||
Sbjct: 2938 tttgataaaagagataagttaatcgagaagattccgttcttttggaatatcgcttta 2994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8626
Number of Sequences: 1807
Number of extensions: 8626
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)