BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZA06RM1.SCF screened BAC_end (965 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig373 579 e-165 >3x_Contig373 Length = 2255 Score = 579 bits (292), Expect = e-165 Identities = 339/347 (97%), Gaps = 7/347 (2%) Strand = Plus / Plus Query: 49 gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1471 gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 1530 Query: 109 atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1531 atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 1590 Query: 169 tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1591 tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 1650 Query: 229 aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1651 aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 1710 Query: 289 ggaacacgactgcactaacatcggaaaactacttnntatggcaatcaaaaaattngaact 348 |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||| Sbjct: 1711 ggaacacgactgcactaacatcgg-aaactactt--tatggcaatcaaaaaatt-gaact 1766 Query: 349 aaaatattggcatcatatgtacctgataccgaaacttatgacatttt 395 || ||||||||||||||||| |||||| |||||||||||||||||| Sbjct: 1767 -aattattggcatcatatgta-ctgata-cgaaacttatgacatttt 1810 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,681 Number of Sequences: 1807 Number of extensions: 32681 Number of successful extensions: 5030 Number of sequences better than 1.0e-20: 1 length of query: 965 length of database: 10,358,551 effective HSP length: 16 effective length of query: 949 effective length of database: 10,329,639 effective search space: 9802827411 effective search space used: 9802827411 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)