BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZA06RM1.SCF screened BAC_end
         (965 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig373                                                          579   e-165

>3x_Contig373 
          Length = 2255

 Score =  579 bits (292), Expect = e-165
 Identities = 339/347 (97%), Gaps = 7/347 (2%)
 Strand = Plus / Plus

                                                                        
Query: 49   gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1471 gagtaaattgaaacccaatggagttatcttcttaagcactataaacagagacccaatctc 1530

                                                                        
Query: 109  atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1531 atggtttaccaccatattcatgggagagcagatattaaaagtagttccaaaaggaactca 1590

                                                                        
Query: 169  tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 tcacgttgaaaagtacatcaactcatcagagatcaaacaatggtttgaagataatgtaca 1650

                                                                        
Query: 229  aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 aggaagatatgaaattttagacactaaaggaaccatgtatctacctttgaccggttgggt 1710

                                                                        
Query: 289  ggaacacgactgcactaacatcggaaaactacttnntatggcaatcaaaaaattngaact 348
            |||||||||||||||||||||||| |||||||||  |||||||||||||||||| |||||
Sbjct: 1711 ggaacacgactgcactaacatcgg-aaactactt--tatggcaatcaaaaaatt-gaact 1766

                                                           
Query: 349  aaaatattggcatcatatgtacctgataccgaaacttatgacatttt 395
             || ||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1767 -aattattggcatcatatgta-ctgata-cgaaacttatgacatttt 1810


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,681
Number of Sequences: 1807
Number of extensions: 32681
Number of successful extensions: 5030
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)