BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA07FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig589 846 0.0
>3x_Contig589
Length = 2261
Score = 846 bits (427), Expect = 0.0
Identities = 579/613 (94%), Gaps = 15/613 (2%)
Strand = Plus / Minus
Query: 144 tcatctgctggttcaccgtcatctgtgaagtcggcttcttcatcactatcttcaatgaat 203
|||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct: 2260 tcatctgctggt-caccgtcatctgt-aagtcggctc--tcatcactatcttca-tgaat 2206
Query: 204 tcttttgaaagtggtctggacttacctctcttagagtcaccattttgaactccgttcaat 263
||||| |||||||||||||||| |||||||||||| |||||||||||| |||||||||||
Sbjct: 2205 tcttt-gaaagtggtctggact-acctctcttaga-tcaccattttga-ctccgttcaat 2150
Query: 264 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2149 tgatcatcatcctcatcatcttcatcaacgatttttttggcagttcttctctttttcttt 2090
Query: 324 gaagatttactatcagagtctgcttttctctttgctttcttccctttcttagatggtgct 383
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2089 gaagatttactatcagagtctgcttttctctttgctttcttccctgtcttagatggtgct 2030
Query: 384 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2029 ttataagacccgtcttcttcttgaggtaggtcatcgttgtcattgtcgtcatcaacaatc 1970
Query: 444 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1969 tcctcttgcgcggtacgttcttggatcaacctttgtgcttcttcttgcaattttctgtat 1910
Query: 504 tcctccgccagtttttcacttttgaccttttcttcttccttttggtgggcgtccctttga 563
|||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||
Sbjct: 1909 tcctccgccagtttttcactgttgatcttttcttcttccttctgttgggcgtccctttga 1850
Query: 564 gctttcagctcacgttgtttcttccaaaactttacgagcatttttcattttggctgagat 623
|||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1849 gcttcaagctcacgttg-ttcttccaaaactttacgagcattttccattttggctgagat 1791
Query: 624 ttccaattcatacgccttttgggcccttctatactgcgctctaaagctgttttcatgggg 683
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
Sbjct: 1790 ttccaattcatacgccttttgg--tcttctatactgcgctctagtgctgttttcatggtg 1733
Query: 684 gtctcacctatttgaatacgttgctcttacttgttctgaaaggaatacctttggatttag 743
|||||||||| ||||||||||||||| || |||||||| ||||||| || ||||||||
Sbjct: 1732 gtctcacctagttgaatacgttgctc-taattgttctg-aaggaattactatggattta- 1676
Query: 744 gtttcccgaagtt 756
|||||| ||||||
Sbjct: 1675 gtttccagaagtt 1663
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9515
Number of Sequences: 1807
Number of extensions: 9515
Number of successful extensions: 121
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)