BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA07RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1507 1304 0.0
>3x_Contig1507
Length = 11359
Score = 1304 bits (658), Expect = 0.0
Identities = 746/766 (97%), Gaps = 7/766 (0%)
Strand = Plus / Minus
Query: 48 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10017 gtaaatatcttttgaatatgctcgttactgcgtgaacatcagtattttgctttccaaaat 9958
Query: 108 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9957 cgactttttcttcttctgcaaacattttctcgtattgctctatgataacctgactacctg 9898
Query: 168 attttctgtaaataccttcggccatcatatattcagggtctgattcgatatagttgatgc 227
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9897 attttctgtaaatac-ttcggccatcatatattcagggtctgattcgatatagttgatgc 9839
Query: 228 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9838 atgttgtaatgattaatggaacatcccgtctttcatatgcacatcttgcaaccagggatg 9779
Query: 288 atccatagagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9778 atccatagagagtttgtccatcagaactggaagatgataaactgttccttggaacagagt 9719
Query: 348 cattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttggattct 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9718 cattcgacgcggaatagggaattgggaaaagtttcaggtcatcaaattcatttggattct 9659
Query: 408 gtagcattggagcactaatttctatggatttggaagaatttggattgacctgtcttacat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9658 gtagcattggagcactaatttctatggatttggaagaatttggattgacctgtcttacat 9599
Query: 468 tagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctattggatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9598 tagtattcccacttccgaaaagtttccaaaatcgaggttttgcaatactgctattggatg 9539
Query: 528 tagaagggagttggtttctagtagggcttagagcattattgcttccgttgaaatccacct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9538 tagaagggagttggtttctagtagggcttagagcattattgcttccgttgaaatccacct 9479
Query: 588 cgtatgcgtcgtcagttaatgattcttgtgatgtcgtcgttaatttgagatcccgttttt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9478 cgtatgcgtcgtcagttaatgattcttgtgatgtcgtcgttaatttgagatcccgttttt 9419
Query: 648 caatccgaaaggcttcggtttctgacgtcaaaagctcttttggaatctttagtttttcaa 707
|||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 9418 caattcgaagggcttcggtttctgacgtcaaagtctcttttgtaatctttagtttttcaa 9359
Query: 708 tgtcagcagtttattgagccttcgccaggtggtaatttcttgtactcccttattaaagtt 767
||||||||||| |||||||||||| || || |||||| |||| || || |||| |||||
Sbjct: 9358 tgtcagcagttaattgagccttcgtca-gttgtaattccttg-acctccatatt-aagtt 9302
Query: 768 tccttaactgcaaactggataagatttaacgttccttttcgaagaa 813
|||||||||||||||| ||| |||||| ||| ||||||||||||||
Sbjct: 9301 tccttaactgcaaact-gat-agatttcacg-tccttttcgaagaa 9259
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7206
Number of Sequences: 1807
Number of extensions: 7206
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)