BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA08FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1435 1530 0.0
>3x_Contig1435
Length = 8899
Score = 1530 bits (772), Expect = 0.0
Identities = 789/792 (99%), Gaps = 2/792 (0%)
Strand = Plus / Plus
Query: 87 cgaatacatcagcattttctctcaaccaacagccttcagcagacaacgcgacagagaagc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2875 cgaatacatcagcattttctctcaaccaacagccttcagcagacaacgcgacagagaagc 2934
Query: 147 aggaagccaaaaatgccgtcagtactgctgtaaaacctgcattctcctttggtagcaccc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2935 aggaagccaaaaatgccgtcagtactgctgtaaaacctgcattctcctttggtagcaccc 2994
Query: 207 cagcagccctaccttctgatacaaccccaaaagaagctgctgcaccatcattttcgttcg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2995 cagcagccctaccttctgatacaaccccaaaagaagctgctgcaccatcattttcgttcg 3054
Query: 267 ggaccacaaagaaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3055 ggaccacaaagaaacctgttcaaggtgatatgagttcgaaacctgcattctcttttggaa 3114
Query: 327 gttcctctgccatccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3115 gttcctctgccatccagcagccctcaattgaaaaagcttccaatgcaattccttcgtttg 3174
Query: 387 caagtcagaacaccagtggccagcctgtcagcggactcaaatttgatttgacagggttta 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3175 caagtcagaacaccagtggccagcctgtcagcggactcaaatttgatttgacagggttta 3234
Query: 447 aaaataataatagacaaactactccgactccgttttcagattcatcaaatgttggatctg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3235 aaaataataatagacaaactactccgactccgttttcagattcatcaaatgttggatctg 3294
Query: 507 ctcgtggaagcaaccctcctgtcccattctcatttgataatgtcgttcaacctgggaata 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3295 ctcgtggaagcaaccctcctgtcccattctcatttgataatgtcgttcaacctgggaata 3354
Query: 567 agataagtgtaacgcagcctactcaaactacatttacttttgcacaacaaaatcaaaaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3355 agataagtgtaacgcagcctactcaaactacatttacttttgcacaacaaaatcaaaaac 3414
Query: 627 catttacttttactggaagtgggccaagcactaccaacagttcacctgcatttggaacca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3415 catttacttttactggaagtgggccaagcactaccaacagttcacctgcatttggaacca 3474
Query: 687 gttccaatcagcctaatgtacctttttcattcggcggaagctcagcttcttccactcccc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 gttccaatcagcctaatgtacctttttcattcggcggaagctcagcttcttccactcccc 3534
Query: 747 aggtaccagcattgggtaccggtttcggtaattctatgcagac-aacacatttaatcctt 805
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3535 aggtaccagcattgggtaccggtttcggtaattctatgcagacaaacacatttaatcctt 3594
Query: 806 cagccgctgccaattttaattttggtgggcaaccatctcaaa-tccttctgtagtatttg 864
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 3595 cagccgctgccaattttaattttggtggtcaaccatctcaaagtccttctgtagtatttg 3654
Query: 865 gatcccaaaccc 876
||||||||||||
Sbjct: 3655 gatcccaaaccc 3666
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6084
Number of Sequences: 1807
Number of extensions: 6084
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)