BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig855 1572 0.0
>3x_Contig855
Length = 3834
Score = 1572 bits (793), Expect = 0.0
Identities = 832/842 (98%), Gaps = 3/842 (0%)
Strand = Plus / Plus
Query: 47 ttagttgcttcattttcttctaaggagatgaaagttgcacctttatccgattggaagtaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 ttagttgcttcattttcttctaaggagatgaaagttgcacctttatccgattggaagtaa 1792
Query: 107 gcgcctagtttgattttcgaaaactctttgcgaccaagtccaaatctttcgtgcaaccgg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1793 gcgcctagtttgattttcgaaaactctttgcgaccaagtccaaatctttcgtgcaaccgg 1852
Query: 167 gctttagtatcctcgaacctttcttcggggaatagtacgaaaaggaaagagataccgtgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1853 gctttagtatcctcgaacctttcttcggggaatagtacgaaaaggaaagagataccgtgc 1912
Query: 227 gagttttcaagttcccggaaatactggttaacgatcactatttttccagttttgactgag 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1913 gagttttcaagttcccggaaatactggttaacgatcactatttttccagttttgactgag 1972
Query: 287 tttaaaggataattgctatttgctgtatcttcgtcatatcctgagtctacttctaactgc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1973 tttaaaggataattgctatttgctgtatcttcgtcatatcctgagtctacttctaactgc 2032
Query: 347 tttatgacatgtagttcttctggtagtactctaccgaagacgaccaaagaagatttcatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2033 tttatgacatgtagttcttctggtagtactctaccgaagacgaccaaagaagatttcatt 2092
Query: 407 gaatcaaaaatcatattaggagtaaggataccttcgaattcaaaagatgaatttgtccat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2093 gaatcaaaaatcatattaggagtaaggataccttcgaattcaaaagatgaatttgtccat 2152
Query: 467 aataaaatattttgtttgtcctcatctgaaaagccaattctcgcctgtagtttctcgatg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2153 aataaaatattttgtttgtcctcatctgaaaagccaattctcgcctgtagtttctcgatg 2212
Query: 527 aattctctgacggtagaagagttcggaactctaaattcataacattgaaagtgaacatag 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2213 aattctctgacggtagaagagttcggaactctaaattcataacattgaaagtgaacatag 2272
Query: 587 ctatcagttaaccagatgaacttgatactacgtaaatgttccagttgatgaagctcgata 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2273 ctatcagttaaccagatgaacttgatactacgtaaatgttccagttgatgaagctcgata 2332
Query: 647 gaaagcacttcatactcgaagtgtggaatagtttccttggtgaaattcttgatcaaataa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2333 gaaagcacttcatactcgaagtgtggaatagtttccttggtgaaattcttgatcaaataa 2392
Query: 707 tcggtcaaaacagaattagagttcatcacaaatttacgacttggnataacagcgtancaa 766
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 2393 tcggtcaaaacagaattagagttcatcacaaatttacgacttggataaacagcgtacaaa 2452
Query: 767 cgaagatattctggcttcaccttggcatgttttgaaattattctagcaagttcactgtna 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2453 cgaagatattctggcttcaccttggcatgttttgaaattattctagcaagttcactgtaa 2512
Query: 827 gtactcttcgctgataa-caaaaggaaaa-ggtgtccgatctt-atcgttggtgataaca 883
||||||||||||||||| ||||||||||| ||||||||||||| |||||| |||||||||
Sbjct: 2513 gtactcttcgctgataaccaaaaggaaaatggtgtccgatcttcatcgttagtgataaca 2572
Query: 884 ta 885
||
Sbjct: 2573 ta 2574
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7195
Number of Sequences: 1807
Number of extensions: 7195
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)