BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA09FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1490 153 8e-37
3x_Contig645 135 2e-31
>3x_Contig1490
Length = 9411
Score = 153 bits (77), Expect = 8e-37
Identities = 135/145 (93%), Gaps = 7/145 (4%)
Strand = Plus / Plus
Query: 732 gaaccttcaatgactgaagaaaa-cgtgttgagacgagttt-accaaggaaacacatcac 789
||||||||| ||||||||||||| ||||||||||||||||| |||||| || ||||||||
Sbjct: 1 gaaccttcagtgactgaagaaaaacgtgttgagacgagtttcaccaagaaaccacatcac 60
Query: 790 actacctctgctgcattgaaggaagg-tacaaagaggtaaag-acgaaacgg-cactgaa 846
|||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct: 61 actacctctgctgcattgaaggaaggttacaaagaggtaaagaacgaaacggacactgaa 120
Query: 847 tgg-aaacagatgac-gtcactaca 869
||| ||||||||||| |||||||||
Sbjct: 121 tggaaaacagatgacggtcactaca 145
>3x_Contig645
Length = 2505
Score = 135 bits (68), Expect = 2e-31
Identities = 188/228 (82%)
Strand = Plus / Minus
Query: 165 aatgggcaggtgccatgcggtaatgatatctccaaatgtgaagttggtgacttatttggt 224
|||||| ||||| ||| ||||||||||| | ||||||||||||||||| ||| ||||
Sbjct: 416 aatgggaaggtgaaatgaggtaatgatatataaaaatgtgaagttggtgaattaagtggt 357
Query: 225 aagtacggtaacatcgactacagttattacgagacggaatatttggatccatacttatca 284
||||| ||||| || | || |||||||| |||| ||||||||||||| ||| |||| |
Sbjct: 356 aagtatggtaaaatagtataaagttattaagagaaggaatatttggataaataattataa 297
Query: 285 ttgatcgagggtgatcccgcttttgttggaggtagatcaattaccttacattattctaat 344
|||| ||||||||| | ||||||||||||||||| ||||| ||| |||||| ||||
Sbjct: 296 ttgaaagagggtgataaagattttgttggaggtagataaattaaattaaattattataat 237
Query: 345 ggtacaagatatgcatgcgctgacattgttccatgtgagaaattgaag 392
|||| |||||||| ||| | ||| |||||| ||||||||||||||||
Sbjct: 236 ggtaaaagatatgaatgagatgaaattgttaaatgtgagaaattgaag 189
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8925
Number of Sequences: 1807
Number of extensions: 8925
Number of successful extensions: 230
Number of sequences better than 1.0e-20: 2
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)