BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZA12FM1.SCF screened BAC_end (949 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1224 773 0.0 >3x_Contig1224 Length = 5948 Score = 773 bits (390), Expect = 0.0 Identities = 423/430 (98%), Gaps = 3/430 (0%) Strand = Plus / Plus Query: 441 atgcagggtgtgtattcatggaagaaatgcatctatatacactaatcatgtgacttacaa 500 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 atgcagggtgtgtatt-atggaagaaatgcatctatatacactaatcatgtgacttacaa 61 Query: 501 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 aatgaaattaccagtagaatatctttgagtagtattaagtgttagaaactctcggtttat 121 Query: 561 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tgaacattgctctcatcatattgtgatatgccttgagccctatctccgaacgcaatgcta 181 Query: 621 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tactcatttctggttgtatgagaattctggttgtttctctcaagttgtcggaatcgataa 241 Query: 681 ccacaagttggttcaagatcagaggcaaagaaaaaac-actgtgattattgctaagaata 739 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct: 242 ccacaagttggttcaagatcagaggcaaagaaaaaacaactgtgattattgctaagataa 301 Query: 740 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacccttcttcttaaaaa 799 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 tgataaacaccaacgcatatatgttcgcattgaatttgcttttacccttcttcttaaaaa 361 Query: 800 taata-gtctggcgtcaatgtccgcctttctcccaaatagcataaaggaatgcaaagtat 858 ||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 362 taataggtctggcgtcaatgtccgcctttctccaaaatagcattaaggaatgcaaagtat 421 Query: 859 ccacatttgg 868 |||||||||| Sbjct: 422 ccacatttgg 431 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6779 Number of Sequences: 1807 Number of extensions: 6779 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 949 length of database: 10,358,551 effective HSP length: 16 effective length of query: 933 effective length of database: 10,329,639 effective search space: 9637553187 effective search space used: 9637553187 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)