BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZA12RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1649 0.0
3x_Contig905 186 5e-47
3x_Contig1486 100 1e-20
3x_Contig1237 100 1e-20
>3x_Contig1017
Length = 3431
Score = 1649 bits (832), Expect = 0.0
Identities = 877/886 (98%), Gaps = 5/886 (0%)
Strand = Plus / Plus
Query: 46 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 cgccaaagagaatgcaacaaatgatgaatatactgtgatgtagtgattgctcattgaata 1358
Query: 106 agtagcgttattcgaagtaaagaatagaaaat-acaagactggggttaaagctgcatcaa 164
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1359 agtagcgttattcgaagtaaagaatagaaaatcacaagactggggttaaagctgcatcaa 1418
Query: 165 ataggcaaatgtgcggcgtatcatggtttgcgcgcacggattatctaacaagtttttcca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 ataggcaaatgtgcggcgtatcatggtttgcgcgcacggattatctaacaagtttttcca 1478
Query: 225 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 ccacttaaaaattgagggagcgttccgcataattataattgctttttttgctgacatcgg 1538
Query: 285 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 catcctgacttcttcttttgtagtgctctatttgtgagtggtgttaaaaaaacattcaaa 1598
Query: 345 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1599 gtggcatgctattctaaggcaatatggaaacatgagagttcctctttgaatatctggagc 1658
Query: 405 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcgggaaacca 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 tccagcctattaggcaagttttgtcagactgcttgtatggaagaggttttcgggaaacca 1718
Query: 465 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaggtttttaag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tattcgactcggtagagtaagagatatgtctgatttatcctcatatgaaaggtttttaag 1778
Query: 525 aatataagaatcaagtatcgaaatatttgcaaaattttggcactatggccgagtggttaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 aatataagaatcaagtatcgaaatatttgcaaaattttggcactatggccgagtggttaa 1838
Query: 585 ggcgacagacttgaaatctgttgggctctgcccgcgctggttcaaatcctgctggtgtcg 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 ggcgacagacttgaaatctgttgggctctgcccgcgctggttcaaatcctgctggtgtcg 1898
Query: 645 ttattttttggaaataactttttttaactagacaataagcgtttagccgggtaatattta 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 ttattttttggaaataactttttttaactagacaataagcgtttagccgggtaatattta 1958
Query: 705 tttatatatatcgggctccttccatggagctgataccgtaagctcacctaatctgcatct 764
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959 tttatatatatc-ggctccttccatggagctgataccgtaagctcacctaatctgcatct 2017
Query: 765 agataatcgggtatgattaacagcgacatagctatgtgattatctgccccattacttaaa 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2018 agataatcgggtatgattaacagcgacatagctatgtgattatctgccccattactt-aa 2076
Query: 825 agtaa-gtttcacttttcgactaaggacgaatgacacaagacacagaacgctcacacggn 883
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2077 agtaaggtttcactttcggactaaggacgaatgacacaagacacagaacgctcacacggt 2136
Query: 884 tgaaaca-tttttttcctgatcctttngaccctgtttgttgtccct 928
||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 2137 tgaaacattttttttcctgatccttttgaccctgtttgttgtccct 2182
>3x_Contig905
Length = 2723
Score = 186 bits (94), Expect = 5e-47
Identities = 97/98 (98%)
Strand = Plus / Minus
Query: 556 aaattttggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 615
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1804 aaatttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgc 1745
Query: 616 ccgcgctggttcaaatcctgctggtgtcgttatttttt 653
||||||||||||||||||||||||||||||||||||||
Sbjct: 1744 ccgcgctggttcaaatcctgctggtgtcgttatttttt 1707
>3x_Contig1486
Length = 12131
Score = 99.6 bits (50), Expect = 1e-20
Identities = 77/86 (89%)
Strand = Plus / Minus
Query: 569 atggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgcgctggttca 628
||||||||| ||||||||||| ||| | ||||||| ||||||||||||||||| |||||
Sbjct: 11487 atggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgcaggttcg 11428
Query: 629 aatcctgctggtgtcgttattttttg 654
| |||||||| |||||||||||||||
Sbjct: 11427 agtcctgctgttgtcgttattttttg 11402
>3x_Contig1237
Length = 6632
Score = 99.6 bits (50), Expect = 1e-20
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 600 atctgttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttt 653
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atctcttgggctctgcccgcgctggttcaaatcctgctggtgtcgttatttttt 2072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6759
Number of Sequences: 1807
Number of extensions: 6759
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 4
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)