BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZB01RM1.SCF screened BAC_end
         (886 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1021                                                        1639   0.0  

>3x_Contig1021 
          Length = 3847

 Score = 1639 bits (827), Expect = 0.0
 Identities = 835/838 (99%)
 Strand = Plus / Minus

                                                                        
Query: 49   gaacaaaatactcgtaatgtaattactattgaatccactccaacttccataacccaagtt 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 gaacaaaatactcgtaatgtaattactattgaatccactccaacttccataacccaagtt 1826

                                                                        
Query: 109  gacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatgaggac 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1825 gacaaggagcaactcgaaggccaaccagcatcttccacttatcccagtaaagatgaggac 1766

                                                                        
Query: 169  aatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatcaacttt 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 aatacgaaatctccaattttccctaagatcaacaaatatgaaataccaaaaatcaacttt 1706

                                                                        
Query: 229  actaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacgagtct 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 actaaatctccttcttttgcagaattatttaaggaaatgcgcatggttttagacgagtct 1646

                                                                        
Query: 289  gatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaatatgcc 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 gatgaagtagtgaattggagaagactatccagtgaagtttcattaaatgaaaaatatgcc 1586

                                                                        
Query: 349  attcatataccgactgataagaacttaagatccaataagcgactatcagcagcagtagaa 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 attcatataccgactgataagaacttaagatccaataagcgactatcagcagcagtagaa 1526

                                                                        
Query: 409  gtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaagaaca 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 gtccctgaacaagatgaactgtctttccacaaggatgatgttaaatctgatcaaagaaca 1466

                                                                        
Query: 469  ctagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatgtaata 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 ctagatactggagtaactctcactaaaagctcaaaattatctggtaattttaatgtaata 1406

                                                                        
Query: 529  aaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaacttcaaga 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 aaaacttctccagtcaaaattataactcgaaatgagttaactatgaaaagaacttcaaga 1346

                                                                        
Query: 589  tcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagcaaaaatgca 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 tcctcgaacctgaacgatgatcctccaagtttctacacggaagatatgagcaaaaatgca 1286

                                                                        
Query: 649  agacttgttgagctaacatttcactcgcaggaagatttaccggaaagtcctttttatact 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 agacttgttgagctaacatttcactcgcaggaagatttaccggaaagtcctttttatact 1226

                                                                        
Query: 709  ccacaaacagaagaaaccaaacctagtgaacacggccatgaagaanacaatgtggatcac 768
            |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 1225 ccacaaacagaagaaaccaaacctagtgaacacggccatgaagaaacaaatgtggatcac 1166

                                                                        
Query: 769  ttagttccaccagaatcaaccataaaattaccgacggaaacgaccaatagccaagatgaa 828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ttagttccaccagaatcaaccataaaattaccgacggaaacgaccaatagccaagatgaa 1106

                                                                      
Query: 829  cctgcaccattattagatgatttagagttcagtttcttccacatgtcatttgacaata 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 cctgcaccattattagatgatttagagttcagtttcttccacatgtcatttgacaata 1048


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6741
Number of Sequences: 1807
Number of extensions: 6741
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 886
length of database: 10,358,551
effective HSP length: 16
effective length of query: 870
effective length of database: 10,329,639
effective search space: 8986785930
effective search space used: 8986785930
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)