BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB03FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1346 0.0
>3x_Contig1520
Length = 10750
Score = 1346 bits (679), Expect = 0.0
Identities = 833/867 (96%), Gaps = 13/867 (1%)
Strand = Plus / Plus
Query: 89 tacaaagcagcatatgaagcgtatatgtacaagttctgtaattaagaattagctaagctg 148
|||||||||||||||| |||||||||||| || | |||||| || ||| | |||| ||
Sbjct: 4813 tacaaagcagcatatgcagcgtatatgtaaaaataatgtaataaaaaataaaataagatg 4872
Query: 149 tggtaaattttagttcgaatatttttgaataaccaaaagcaacccccactctggcaccta 208
|||||||||| |||| |||||||||||||||| |||||||||||| |||||||||| ||
Sbjct: 4873 tggtaaatttaagttagaatatttttgaataaa-aaaagcaacccc-actctggcac-ta 4929
Query: 209 cgtagaaacttcatatctgcaccaaaaagaatacagatatgacatcgaatgtaatactgt 268
|||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 4930 cgtagaaactccagatctgcacaaaaaaga-tacagatatgacatcgaatgtaatactgt 4988
Query: 269 tcgaggacaggtgcgattgcgaagccaagttgccgcgacagttcgacgtgctgacgtcta 328
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4989 tcgaggacaggtgcgattgcgaagc-aagttgccgcgacagttcgacgtgctgacgtcta 5047
Query: 329 aagtggcattgattggtaattccactgtgggtaagacttgcatggttggacgttggatca 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5048 aagtggcattgattggtaattccactgtgggtaagacttgcatggttggacgttggatca 5107
Query: 389 agggccactcagtgcttcatgatgttgatgaaaccggagagcatgaggaagatttgttcc 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5108 agggccactcagtgcttcatgatgttgatgaaaccggagagcatgaggaagatttgttcc 5167
Query: 449 ataagattatcgaatatgatgcgttaacgaaatcggccaatttccaggaatgttgcaagt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5168 ataagattatcgaatatgatgcgttaacgaaatcggccaatttccaggaatgttgcaagt 5227
Query: 509 tgttgaagcatgcttcactcgatgagattaaaaaagtgagcagtaacgtgtatcagaata 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5228 tgttgaagcatgcttcactcgatgagattaaaaaagtgagcagtaacgtgtatcagaata 5287
Query: 569 tggcatactcagattcacaaaacaccaaatacgatgcgactctgaaattggacgtccagg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5288 tggcatactcagattcacaaaacaccaaatacgatgcgactctgaaattggacgtccagg 5347
Query: 629 tcgtcgacgtgacgcacttcgatgcgacagattactcggatctcagacatttacaagtga 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5348 tcgtcgacgtgacgcacttcgatgcgacagattactcggatctcagacatttacaagtga 5407
Query: 689 accaagcagatgggtttatcttatgttatgacaccaccaaccctgcaacgttagcggata 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5408 accaagcagatgggtttatcttatgttatgacaccaccaaccctgcaacgttagcggata 5467
Query: 749 tgacgttgtaccacagaataatcacaagaatcaaaggtgacgacgtgccaatcatagtgt 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5468 tgacgttgtaccacagaataatcacaagaatcaaaggtgacgacgtgccaatcatagtgt 5527
Query: 809 gtgggaccaagatagactgcatattcag-aaggaaagtatccgaggatgaagttatcggn 867
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 5528 gtgggaccaagatagactgcata-tcagaaaggaaagtatccgaggatgaagttatcgg- 5585
Query: 868 attatgtgaaagagatgggagttagatttcgaatccttgttacttttgagaattcacgcg 927
|||||||| |||||||||||| ||||||||| || | |||||| |||||||||||| |||
Sbjct: 5586 attatgtg-aagagatgggag-tagatttcg-atacctgttac-tttgagaattca-gcg 5640
Query: 928 atggaaaaattcaacatcgatgaaact 954
|||||||| |||||||||||||||||
Sbjct: 5641 atggaaaatatcaacatcgatgaaact 5667
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5734
Number of Sequences: 1807
Number of extensions: 5734
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)