BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB03RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1620 0.0
>3x_Contig1744
Length = 24119
Score = 1620 bits (817), Expect = 0.0
Identities = 866/878 (98%), Gaps = 4/878 (0%)
Strand = Plus / Minus
Query: 43 gcttctctctttt-agcaactctttgagctcttctttctctagcagctctgttcttagat 101
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13074 gcttctctcttttcagcaactctttgagctcttctttctctagcagctctgttcttagat 13015
Query: 102 cttctagcttcagcttcttccttcaaagccttttcacgttgagcatcagccttagcttgg 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13014 cttctagcttcagcttcttccttcaaagccttttcacgttgagcatcagccttagcttgg 12955
Query: 162 atgatgtgttcaaccaaagctctcttgtgcttgaaggtgttacccttagcagacttgtac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12954 atgatgtgttcaaccaaagctctcttgtgcttgaaggtgttacccttagcagacttgtac 12895
Query: 222 aaagagtggtacaagtgtctgtcgatcttaccagcgtctctgtacttggccaacaatctt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12894 aaagagtggtacaagtgtctgtcgatcttaccagcgtctctgtacttggccaacaatctt 12835
Query: 282 ctcaagacacgtaatcttctgatccagacaacttgggatggcaatctagcttccttggta 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12834 ctcaagacacgtaatcttctgatccagacaacttgggatggcaatctagcttccttggta 12775
Query: 342 ccctttctcttaccgtaaccagtgtgacgaccgtttctcttggattcagccatagctcta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12774 ccctttctcttaccgtaaccagtgtgacgaccgtttctcttggattcagccatagctcta 12715
Query: 402 gttctggatctagagtggattctagttggcttcttaacgatggtaccgttcttgaccaac 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12714 gttctggatctagagtggattctagttggcttcttaacgatggtaccgttcttgaccaac 12655
Query: 462 tttctgatggcatttctggagttggcttgagcgatttcggcggtttcagaaggatccatc 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12654 tttctgatggcatttctggagttggcttgagcgatttcggcggtttcagaaggatccatc 12595
Query: 522 cagatctttctcttaccaacaccggcaacagaagcggcaagtctcttttgagttctcaag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12594 cagatctttctcttaccaacaccggcaacagaagcggcaagtctcttttgagttctcaag 12535
Query: 582 ttagccctgcaagtaataatgaccaatgataatgtttcattatcagtgttttagtttctg 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12534 ttagccctgcaagtaataatgaccaatgataatgtttcattatcagtgttttagtttctg 12475
Query: 642 ttagtatatttgatatcgatatttcaagatgaagacgacncaaagaagaaaattacatan 701
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 12474 ttagtatatttgatatcgatatttcaagatgaagacgacacaaagaagaaaataacataa 12415
Query: 702 agacgtatcaccaattatttcctaatcattgaaggtagaaatatttctcttataatcact 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12414 agacgtatcaccaattatttcctaatcattgaaggtagaaatatttctcttataatcact 12355
Query: 762 gcagttctacatgggatcctgcatctcaaagtatgaaaacacataagtcttccaacatca 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12354 gcagttctacatgggatcctgcatctcaaagtatgaaaacacataagtcttccaacatca 12295
Query: 822 attcaattcttccaaaattaaaggtctttattagccggtattccccagtatgggggtttg 881
|||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||
Sbjct: 12294 attcaattcttccaaaattaaaggtctttaatagccgtaattccccagtat-ggtgtttg 12236
Query: 882 tattatagntctcacatcgggcattggctttcatcacc 919
|||||||| ||||||||| |||||| ||||||||||||
Sbjct: 12235 tattatagttctcacatc-ggcatt-gctttcatcacc 12200
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7676
Number of Sequences: 1807
Number of extensions: 7676
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)