BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB04FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1793 1588 0.0
>3x_Contig1793
Length = 40499
Score = 1588 bits (801), Expect = 0.0
Identities = 825/829 (99%), Gaps = 3/829 (0%)
Strand = Plus / Minus
Query: 86 catgcatctggcttctttgtattgttcaatatctcgggcatttgagagatgtttccgcta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12527 catgcatctggcttctttgtattgttcaatatctcgggcatttgagagatgtttccgcta 12468
Query: 146 agttcaatgaaatccatgcagcgtttacaaagtttttagctcatagagaagagtttgttc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12467 agttcaatgaaatccatgcagcgtttacaaagtttttagctcatagagaagagtttgttc 12408
Query: 206 aagaatctgcttcgagaggtttaagtattgtgtatgatatgagcgatgctgacatgcggg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12407 aagaatctgcttcgagaggtttaagtattgtgtatgatatgagcgatgctgacatgcggg 12348
Query: 266 agactatggtaaagggactatttaaaacattgacaaactccagttcagcactctcccttc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12347 agactatggtaaagggactatttaaaacattgacaaactccagttcagcactctcccttc 12288
Query: 326 aagcaggctcagtgtctggagaaacagaattgtttgacgctggtgttttgagtacaaacg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12287 aagcaggctcagtgtctggagaaacagaattgtttgacgctggtgttttgagtacaaacg 12228
Query: 386 atggatctgtctccacttataaggatattttaaatttggcaaatgaggttaacgatcccg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12227 atggatctgtctccacttataaggatattttaaatttggcaaatgaggttaacgatcccg 12168
Query: 446 gtcttgtatacaagtttatggcattagcaaaaaattcttctttgtggaattctaggaagg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12167 gtcttgtatacaagtttatggcattagcaaaaaattcttctttgtggaattctaggaagg 12108
Query: 506 gagtcgcgtttggtattggtgctattttttcaaacgtttcgttgcaagatcaacttatca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12107 gagtcgcgtttggtattggtgctattttttcaaacgtttcgttgcaagatcaacttatca 12048
Query: 566 atgactctacactttccaagagactagtccc-aaaactttttagatacagatttgatccc 624
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 12047 atgactctacactttccaagagactagtcccaaaaactttttagatacagatttgatccc 11988
Query: 625 tcaacggatgtggccaattcaatggataatatttgggatacactatttccggagggatct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11987 tcaacggatgtggccaattcaatggataatatttgggatacactatttccggagggatct 11928
Query: 685 caagctgttgagaaatatttcgatatcgtgttggaagaagtcctaaccaattccgggaat 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11927 caagctgttgagaaatatttcgatatcgtgttggaagaagtcctaaccaattccgggaat 11868
Query: 745 agagagtggagagtgcgtgaagcctcttctgcagctcttctgcatttagtacaaacttat 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11867 agagagtggagagtgcgtgaagcctcttctgcagctcttctgcatttagtacaaacttat 11808
Query: 805 ccactcgaaaattttgaaaatatattcgaagaaatttggactgttgcgttcagattactg 864
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 11807 ccactcgaaaattttgaaaataaattcgaagaaatttggactgttgcgttcagattactg 11748
Query: 865 gacgacatcaaggacagtgttcagg-aatccggcacatccctagcacgt 912
||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 11747 gacgacatcaaggacagtg-tcaggaaatccggcacatccctagcacgt 11700
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6472
Number of Sequences: 1807
Number of extensions: 6472
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)