BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB04RM1.SCF screened BAC_end
(893 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1076 1590 0.0
>3x_Contig1076
Length = 4245
Score = 1590 bits (802), Expect = 0.0
Identities = 849/860 (98%), Gaps = 4/860 (0%)
Strand = Plus / Minus
Query: 37 agcttgatacttgggcctggatcctcttt-aacgttttgacgcagtttgcccttttctct 95
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3347 agcttgatacttgggcctggatcctctttcaacgttttgacgcagtttgcccttttctct 3288
Query: 96 acaagttcacgactattgtctggtttatttattgatctgttcaccaaatggaactggcca 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 acaagttcacgactattgtctggtttatttattgatctgttcaccaaatggaactggcca 3228
Query: 156 aggattcctctcattatattgatgctcttatctgcaatccttgctcaggtaatcattatt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227 aggattcctctcattatattgatgctcttatctgcaatccttgctcaggtaatcattatt 3168
Query: 216 catgcgatgaacgtggtgaacatatcttacatcgcaattgcaagtgcaatctcgggtttc 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3167 catgcgatgaacgtggtgaacatatcttacatcgcaattgcaagtgcaatctcgggtttc 3108
Query: 276 acatacggtgggcttttcaccatattcccagcattaactcttaatctctggggagatgag 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3107 acatacggtgggcttttcaccatattcccagcattaactcttaatctctggggagatgag 3048
Query: 336 gtctttggtaccgcttacggtacgttcatgttgggacctgcatttggatcttcatttttt 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3047 gtctttggtaccgcttacggtacgttcatgttgggacctgcatttggatcttcatttttt 2988
Query: 396 ggcgtcatgtatgctcaagtacacgattccaattgcaaatcggtcattccagccgccaca 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2987 ggcgtcatgtatgctcaagtacacgattccaattgcaaatcggtcattccagccgccaca 2928
Query: 456 gccgaccctgtcacttcttctcccaactgcattgtgcctgcatttaccgcctccactatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2927 gccgaccctgtcacttcttctcccaactgcattgtgcctgcatttaccgcctccactatt 2868
Query: 516 gcactagtagtggctctcacaattactataatagcgacggtaaaatctaaaagacttaga 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2867 gcactagtagtggctctcacaattactataatagcgacggtaaaatctaaaagacttaga 2808
Query: 576 agtgcctaaatactaccaattcccttcataatttaatgtatacacgaacatagataggac 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2807 agtgcctaaatactaccaattcccttcataatttaatgtatacacgaacatagataggac 2748
Query: 636 gtatggtactggaatatctgactttgagtcaagtggaaccattgtccttattgaatcatt 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2747 gtatggtactggaatatctgactttgagtcaagtggaaccattgtccttattgaatcatt 2688
Query: 696 tgatacgagtttcttattttgcccattttttattgccagataatttcaccttttcttcag 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2687 tgatacgagtttcttattttgcccattttttattgccagataatttcaccttttcttcag 2628
Query: 756 tacgtgttcagttcagtccaaaag-aagacttc-aaacgctaaacagaacanagctacct 813
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 2627 tacgtgttcagttcagtccaaaagaaagacttcaaaacgctaaacagaacaaagctacct 2568
Query: 814 ttcaacttnatagaataacagactcttacaag-agtcatttgttgtattaagtcaattgt 872
|||||||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 2567 ttcaacttataagattaacagactcttacaagaagtcattgtttgtattaagtcaattgt 2508
Query: 873 gctttacaaatacttttact 892
||||||||||||||||||||
Sbjct: 2507 gctttacaaatacttttact 2488
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5683
Number of Sequences: 1807
Number of extensions: 5683
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 893
length of database: 10,358,551
effective HSP length: 16
effective length of query: 877
effective length of database: 10,329,639
effective search space: 9059093403
effective search space used: 9059093403
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)