BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB05FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig150 1469 0.0
>3x_Contig150
Length = 1017
Score = 1469 bits (741), Expect = 0.0
Identities = 808/821 (98%), Gaps = 7/821 (0%)
Strand = Plus / Plus
Query: 85 tagaaacaacaaagcattgtattctttggaaccgtatgagctttctgctactttcaaaaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tagaaacaacaaagcattgtattctttggaaccgtatgagctttctgctactttcaaaaa 261
Query: 145 tattttaaagcagggtgacttgacaccaaatcagagaattcaagtacataataagttaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tattttaaagcagggtgacttgacaccaaatcagagaattcaagtacataataagttaat 321
Query: 205 cgaagaactgacaaaatttgatttcgctgttgccgctatacacctaaaagaattggagca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cgaagaactgacaaaatttgatttcgctgttgccgctatacacctaaaagaattggagca 381
Query: 265 gatatcaggacctttgtctgtaccagcttttattcaagtacttgaaaataacccaggaag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatatcaggacctttgtctgtaccagcttttattcaagtacttgaaaataacccaggaag 441
Query: 325 agttaaaagttcatgggagtattttgaagagaactttagtaccgtaaagctttcagatga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agttaaaagttcatgggagtattttgaagagaactttagtaccgtaaagctttcagatga 501
Query: 385 tgctttgataacagttttaaatcgcttggtcaactttgatccaatcgacattagagatgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tgctttgataacagttttaaatcgcttggtcaactttgatccaatcgacattagagatgg 561
Query: 445 caaaaaagtaatgacagtcacagatgttgcacgcagtatccatataatcaatctcattag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaaaaagtaatgacagtcacagatgttgcacgcagtatccatataatcaatctcattag 621
Query: 505 agataaacccaagatcagtcatgaagtttggaacaaattaattgaaaacattattctctc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 agataaacccaagatcagtcatgaagtttggaacaaattaattgaaaacattattctctc 681
Query: 565 aaatacttctgtcgtattacctaaggtatttgaaatcatcccattgcaactcgatattcc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaatacttctgtcgtattacctaaggtatttgaaatcatcccattgcaactcgatattcc 741
Query: 625 ggaaacatcggaagaactgacgcacctacaattatacgttttactccatttgaaaaacct 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ggaaacatcggaagaactgacgcacctacaattatacgttttactccatttgaaaaacct 801
Query: 685 gagagatttgtttgaaacagagcagaatacgtttattagacttttttctcttgtcgggac 744
| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 802 cacacatttgtttgaaacagagcagaatacgtttattagacttttttctcttgtcggaac 861
Query: 745 acatgataccgttcccattactgaaaaag-agcacaggcttatgaaatcg-ttgtcaaag 802
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 862 acatgataccgttcccattactgaaaaagaagcacaggcttatg-aatcgtttgtcaaag 920
Query: 803 atttcaatgctatttggagaaaaatttgggactcgagagcagtgatttagtggcctcaaa 862
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 atttcaatgcta-ttggag-aaaatttgggactcgagagcagtgatttagtggcctcaaa 978
Query: 863 aattgttacggggatcgacgtttgaaggaatgtctttcttt 903
||||| ||| ||||||||||||||||| |||| ||||||||
Sbjct: 979 aattggtac-gggatcgacgtttgaagaaatg-ctttcttt 1017
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7641
Number of Sequences: 1807
Number of extensions: 7641
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)