BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB05RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1073 1653 0.0
>3x_Contig1073
Length = 3973
Score = 1653 bits (834), Expect = 0.0
Identities = 866/873 (99%), Gaps = 3/873 (0%)
Strand = Plus / Minus
Query: 48 gaatcgctgtttctccttcagcattgatcaccggagtgactgaatggctggacatctatt 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1675 gaatcgctgtttctccttcagcattgatcaccggagtgactgaatggctggacatctatt 1616
Query: 108 gatttgtgaagcactaggtatcacacaaaactagaaaaaagcgagtctccgaaagaaggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1615 gatttgtgaagcactaggtatcacacaaaactagaaaaaagcgagtctccgaaagaaggt 1556
Query: 168 gtgtttaaggtatctagatcgccgatataggtacaaagaaagtaagctccatctaattag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1555 gtgtttaaggtatctagatcgccgatataggtacaaagaaagtaagctccatctaattag 1496
Query: 228 tcgcgttttccttttctgtcattgtacatattaagaagtccatctcgaatctttcgttgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1495 tcgcgttttccttttctgtcattgtacatattaagaagtccatctcgaatctttcgttgt 1436
Query: 288 tttgcatgttgttgaatttcgagttcaataatacggcttatatccgggtaaatgattaca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1435 tttgcatgttgttgaatttcgagttcaataatacggcttatatccgggtaaatgattaca 1376
Query: 348 taaatgctctccgtacatagtaacaaggacagattaaagactatatgctgttgcttagtg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1375 taaatgctctccgtacatagtaacaaggacagattaaagactatatgctgttgcttagtg 1316
Query: 408 attctaatcatagttctgacagttaggtttatcctctttatgaacactgactatcccctc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 attctaatcatagttctgacagttaggtttatcctctttatgaacactgactatcccctc 1256
Query: 468 tgtgacagcctaagtccttttcaaatggttatgggaacaacgagtttaaattcacctccc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1255 tgtgacagcctaagtccttttcaaatggttatgggaacaacgagtttaaattcacctccc 1196
Query: 528 tggcaattgacgttgatcatgtgaccgaaaagtggtaattccacgctaaggaacggatca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1195 tggcaattgacgttgatcatgtgaccgaaaagtggtaattccacgctaaggaacggatca 1136
Query: 588 tcaaccgatgattcagtgtaatctcaacatcaaatcgactcaaacgacccattgattctc 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1135 tcaaccgatgattcagtgtaatctcaacatcaaatcgactcaaacgacccattgattctc 1076
Query: 648 ttccttcttttccatttctgccctgattcaaacacattctaattacctaattagtttcct 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1075 ttccttcttttccatttctgccctgattcaaacacattctaattacctaattagtttcct 1016
Query: 708 agaccctaactcccccagagttatcactctcagtgatctgatctgattacttactcatac 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 agaccctaactcccccagagttatcactctcagtgatctgatctgattacttactcatac 956
Query: 768 atacatcaaagcaaattccacacatcacggcgtccggnaagatttttaccttaaggcaca 827
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 955 atacatcaaagcaaattccacacatcacggcgtccggaagaatttttaccttaaggcaca 896
Query: 828 atacaaatggtggcattgccatctgcaa-tttaagacacagtcgtccttttgcatcggtt 886
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 895 atacaaatggtggcattgccatctgcaattttaagacacagtcgtccttttgcatcgttt 836
Query: 887 cttgctgccatttagc-aaccgcaaaagtcatt 918
|||||||||| ||||| ||||||||||||||||
Sbjct: 835 cttgctgcca-ttagcaaaccgcaaaagtcatt 804
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5596
Number of Sequences: 1807
Number of extensions: 5596
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)