BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB07RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1720 1588 0.0
>3x_Contig1720
Length = 19870
Score = 1588 bits (801), Expect = 0.0
Identities = 849/860 (98%), Gaps = 4/860 (0%)
Strand = Plus / Minus
Query: 47 ttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagacttt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16590 ttaaacactttaaaagaggatgatcctggattaagaaagttggtagaggtagcagacttt 16531
Query: 107 caagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaaaac 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16530 caagagttaacatcgattggtcttggacggactggagaaatgaataggatgatcaaaaac 16471
Query: 167 ctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaattt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16470 ctcacaaatgaaactctttgggaattcttattattgaccaaaaatacgctaagggaattt 16411
Query: 227 ctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactttct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16410 ctagccagtgagcatattcagggagatatagacgagaggatagtccatttcttactttct 16351
Query: 287 cctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcacaaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16350 cctggaacagtgttgagtgtggtagatttctgtggatgttccggatccgttttcacaaaa 16291
Query: 347 cagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactttcag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16290 cagtttgttacagcagtagaaaagatggcggcacacccaagttctcgtgaaaactttcag 16231
Query: 407 attacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaagcta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16230 attacatgtctaggtttgaatgactgtacagacattccagataataccctttcaaagcta 16171
Query: 467 ttgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgatggt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16170 ttgaaccttctgccggagttacagaagttagatttaacgcatactgctattgacgatggt 16111
Query: 527 actctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaatgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16110 actctaataaataatttaccacattggaaaaatttgacacatttatcctttggagaatgt 16051
Query: 587 ttgcaattgacgccaagaggaattttggagttcttttcataccatccagctgtaacagat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16050 ttgcaattgacgccaagaggaattttggagttcttttcataccatccagctgtaacagat 15991
Query: 647 gaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgtcaaca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15990 gaaaataacaatagtacgctacaatggctaaacgtgcaagtgcatccacatacgtcaaca 15931
Query: 707 tggaccgatacgcagacattgtttttgttaaagaagntatgtcaatatggacacaataaa 766
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15930 tggaccgatacgcagacattgtttttgttaaagaagttatgtcaatatggacacaataaa 15871
Query: 767 acgttggaataccttaacattcggag-actgccattgcactattcagatgaccgcacgct 825
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 15870 acgttggaataccttaacat-cggaggactgccattgcactattcagatgaccgcacgct 15812
Query: 826 aatcaaaactccgcact-ttatcagtgccatgattcccttaagtttattaaaggtgattt 884
||||||||||||||||| ||||||||||||||||||| | |||||| ||||| ||| ||
Sbjct: 15811 aatcaaaactccgcactattatcagtgccatgattccttacagttta-taaagttgaatt 15753
Query: 885 ttccagcattggaaagtttg 904
||||||||||| ||||||||
Sbjct: 15752 ttccagcattgaaaagtttg 15733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6340
Number of Sequences: 1807
Number of extensions: 6340
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)