BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB08FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1600 1526 0.0
3x_Contig1728 347 2e-95
>3x_Contig1600
Length = 9359
Score = 1526 bits (770), Expect = 0.0
Identities = 825/838 (98%), Gaps = 4/838 (0%)
Strand = Plus / Plus
Query: 85 tacaatgaagagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgatt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2699 tacaatgaagagggttcctgggtcttcaatgacgcagaagccttggaagaatttgcgatt 2758
Query: 145 gactggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2759 gactggttctcgaagaatgagtaatgaacccccaaaaacgctactggcaagattgtaaaa 2818
Query: 205 ttacgttaaaaactatcacataataggggaaagaaacagactgcttataaaatgtagtga 264
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2819 ttacgttaaaaacgaacacataataggggaaagaaacagactgcttataaaatgtagtga 2878
Query: 265 attccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagagtact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2879 attccacgtattacctttaataaattcttttgaaaaacctgacgatatatacagagtact 2938
Query: 325 taaagacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaaatac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2939 taaagacgatatgtatatagctcaaagtatttgaatcaataactgacgacatgcaaatac 2998
Query: 385 ataatatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacacaaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2999 ataatatcgtaaaacaccaaatatatgcaccttcataacacccacacgtctcacacaaca 3058
Query: 445 tattgggactgttttctttacttctgttttgaattacgacgcaaattaaatttccctttt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3059 tattgggactgttttctttacttctgttttgaattacgacgcaaattaaatttccctttt 3118
Query: 505 gaaaaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaatacg 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3119 gaaaaaattttcaaatgaaaaaaagctgtccagactctggtgatatataatcagaatacg 3178
Query: 565 gaaagccatatttttcaacttacaactttcacagcagtagtacggtactgttcaattcta 624
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 3179 gaaagccatatttttcaacttacaactttcacagcagtagtacggtactgttaaattata 3238
Query: 625 ctgtataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagtacatt 684
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3239 atgtataactttgctcaaccaaccaaagcaaacgacacataaccaaaaatgaagtacatt 3298
Query: 685 caaactgaccaagtcctagatgtcccagaaagtgttaccgttcaaatcagatccagaatt 744
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3299 caaactgaccaagtcctagatgtcccagaaggtgttaccgttcaaatcagatccagaata 3358
Query: 745 atcaaggttactggaccaagaggtgtcttgactaagaac-tgaagcacatcgatgttacc 803
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3359 atcaaggttactggaccaagaggtgtcttgactaagaacttgaagcacatcgatgttacc 3418
Query: 804 ttcaccaaggtctttaacagacaaatt-agatcaccgttcacaacggtgacagaaagcac 862
||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 3419 ttcaccaaggtctctaacagacaaattaagatcaccgtccacaacggtgacagaaagcac 3478
Query: 863 gttgctgctttgagaactgttaagtctttgatttct-acttgat-actggtgtcacca 918
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 3479 gttgctgctttgagaactgttaagtctttgatttctaacttgatcactggtgtcacca 3536
>3x_Contig1728
Length = 20685
Score = 347 bits (175), Expect = 2e-95
Identities = 216/227 (95%), Gaps = 2/227 (0%)
Strand = Plus / Plus
Query: 673 atgaagtacattcaaactgaccaagtcctagatgtcccagaaagtgttaccgttcaaatc 732
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 19833 atgaagtacattcaaactgaccaagtcctagatgtcccagaaggtgttaccgtccaaatc 19892
Query: 733 agatccagaattatcaaggttactggaccaagaggtgtcttgactaagaac-tgaagcac 791
|||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct: 19893 agatccagaaacatcaaggttactggtccaagaggtgttttgactaagaacttgaagcac 19952
Query: 792 atcgatgttaccttcaccaaggtctttaacagacaaat-tagatcaccgttcacaacggt 850
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 19953 atcgatgttaccttcaccaaggtctctaacagacaaatcaagatcaccgttcacaacggt 20012
Query: 851 gacagaaagcacgttgctgctttgagaactgttaagtctttgatttc 897
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 20013 gacagaaagcacgttgctgctttgagaactgtcaagtctttgatttc 20059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7241
Number of Sequences: 1807
Number of extensions: 7241
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)