BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB08RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1614 0.0
>3x_Contig1642
Length = 16641
Score = 1614 bits (814), Expect = 0.0
Identities = 866/877 (98%), Gaps = 5/877 (0%)
Strand = Plus / Minus
Query: 45 tggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacagcaatatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7814 tggcgttgctgctatttgtttatttaagcatcatactggaatttccaagacagcaatatt 7755
Query: 105 gtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaagaagaat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7754 gtacgggttagcacacttcttacgtactgcttactatgttgactatttgaaaagaagaat 7695
Query: 165 gaagtagtaccgtttcgaagattattttttctttgtcactatacaaatgacatgcttgtg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7694 gaagtagtaccgtttcgaagattattttttctttgtcactatacaaatgacatgcttgtg 7635
Query: 225 ccactgagcaatgtgataaagggaacttagtgttccggttctaatgttttctggttttgc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7634 ccactgagcaatgtgataaagggaacttagtgttccggttctaatgttttctggttttgc 7575
Query: 285 aaaagctatgagctttagtttataaaaagaatagaagatattttagaccttaaactagcg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7574 aaaagctatgagctttagtttataaaaagaatagaagatattttagaccttaaactagcg 7515
Query: 345 gtggcgtagagtgtaagtttgaacgttctatatacgtttctatgcgagtatttttttttc 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7514 gtggcgtagagtgtaagtttgaacgttctatatacgtttctatgcgagtatttttttttc 7455
Query: 405 ctttactacgtaaatatcgcttatgcatttgatgccattttcattcttttccggcttatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7454 ctttactacgtaaatatcgcttatgcatttgatgccattttcattcttttccggcttatt 7395
Query: 465 caaggctcgaccggccaaataacgaaaaaaaaaaaaaaaaaaagcatcaaatatttatct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7394 caaggctcgaccggccaaataacgaaaaaaaaaaaaaaaaaaagcatcaaatatttatct 7335
Query: 525 tgctaatacactggagtaactcagagtctttcttagctccacttgactaggtaagatgaa 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7334 tgctaatacactggagtaactcagagtctttcttagctccacttgactaggtaagatgaa 7275
Query: 585 gtatctattcagtgtaattgattatatgactgtttttactgtacctgcctcatttcggct 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7274 gtatctattcagtgtaattgattatatgactgtttttactgtacctgcctcatttcggct 7215
Query: 645 tctaggctaccaaatgtaacgcctttggccgttcggcagaaaatcaagatacaactttga 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7214 tctaggctaccaaatgtaacgcctttggccgttcggcagaaaatcaagatacaactttga 7155
Query: 705 ctgggaaatcctgggaaatgagcacttgacaattaattatagttccgttccctaggaaag 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7154 ctgggaaatcctgggaaatgagcacttgacaattaattatagttccgttccctaggaaag 7095
Query: 765 aagaaaactactgggggaacag-agatatagaagatgcttacatcagtataggcgatggc 823
|||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 7094 aagaaaactact-gggaaacagaagatatagaagatgcatacatcagtataggcgatggc 7036
Query: 824 cagctattatcctttaactttgaacattatagnatatgtatttatatgntaagatgtgac 883
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 7035 cagctattatccttaaactttgaacattatagtatatgtatttatatg-taagatgtgac 6977
Query: 884 tgatattgcacctttgttgcaagaaaattgaaccgat 920
|||||||||| ||||| ||| ||||||||||| ||||
Sbjct: 6976 tgatattgca-ctttggtgc-agaaaattgaaacgat 6942
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,304
Number of Sequences: 1807
Number of extensions: 21304
Number of successful extensions: 3709
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)