BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB09FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1354 1213 0.0
>3x_Contig1354
Length = 7778
Score = 1213 bits (612), Expect = 0.0
Identities = 688/702 (98%), Gaps = 9/702 (1%)
Strand = Plus / Plus
Query: 87 cttgagtttttccgaacaaagggttgtaaaagcagagaagttggaaacacagtcgaagat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6699 cttgagtttttccgaacaaagggttgtaaaagcagagaagttggaaacacagtcgaagat 6758
Query: 147 gtagggaaacagcgtaacatcattggtcgaagaccggttcctgtgggaacatggtgcggc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6759 gtagggaaacagcgtaacatcattggtcgaagaccggttcctgtgggaacatggtgcggc 6818
Query: 207 tgcgtgtttgccacaaaaacgaaaaaagaaccaaaaaaaaacgttaaacgctaatatcgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6819 tgcgtgtttgccacaaaaacgaaaaaagaaccaaaaaaaaacgttaaacgctaatatcgt 6878
Query: 267 tcgtttggtaaaaaaaaggaatcgccgaatcttgaattccaggatttctatgaaatcctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6879 tcgtttggtaaaaaaaaggaatcgccgaatcttgaattccaggatttctatgaaatcctg 6938
Query: 327 gaattctttactgctttcatactcgaatttcgtctggttcgttgtttttgatttttcatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6939 gaattctttactgctttcatactcgaatttcgtctggttcgttgtttttgatttttcatt 6998
Query: 387 attattcatagagattcagtatagtgcaaactgagttcagcatgtagagaaagaaggtcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6999 attattcatagagattcagtatagtgcaaactgagttcagcatgtagagaaagaaggtcg 7058
Query: 447 acatccgatatgtcaggttatgcaagtgttaatgaaacgcctcatcttgaagacgaggta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7059 acatccgatatgtcaggttatgcaagtgttaatgaaacgcctcatcttgaagacgaggta 7118
Query: 507 gatggccatttcggatggctggatgcgattcgggtgttgtttggtgtcctgttagcctca 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7119 gatggccatttcggatggctggatgcgattcgggtgttgtttggtgtcctgttagcctca 7178
Query: 567 caactaactgtgaaatgtgtgtcgggatactggtggcttccaacttttgattggtggtcc 626
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7179 caactaactgtgaaatgtgtgtcgggatactggtggctt-caacttttgattggtggtcc 7237
Query: 627 cgagtt-gcacagcgggtatagggttaggct-actggtctacacacaattatactatccc 684
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 7238 cgagttggcacagcgggtatagggttaggctaactggtctacacacaattatactat-cc 7296
Query: 685 cgtat-acttcactttacaggagttgagtccggtcttcaggtgattacagnntagtcaaa 743
||||| ||||||||||||||||||||||| |||| ||||||||| |||| |||||||
Sbjct: 7297 cgtataacttcactttacaggagttgagt-cggttctcaggtgataacagta-agtcaaa 7354
Query: 744 cgaccaacccaatcttattagcaatcaatagggaccgtgttt 785
||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 7355 cgaccaa-ccaatcttattagcaatcaata-ggaccgtgttt 7394
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6009
Number of Sequences: 1807
Number of extensions: 6009
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)