BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB09RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1288 1354 0.0
>3x_Contig1288
Length = 8015
Score = 1354 bits (683), Expect = 0.0
Identities = 803/837 (95%), Gaps = 6/837 (0%)
Strand = Plus / Plus
Query: 47 tcttgcgttccgaagtagttgttctcgagtaaatttagaagaattgggggtctcttcgtg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6192 tcttgcgttccgaagtagttgttctcgagtaaatttagaagaattgggggtctcttcgtg 6251
Query: 107 attcccattggtatttgctaaagtggtgttttctatcccaacctcattaacgtatgactc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6252 attcccattggtatttgctaaagtggtgttttctatcccaacctcattaacgtatgactc 6311
Query: 167 aagtaaatattgatgatttcccaccaaattaatgggaacagtaccccaattttcttttct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6312 aagtaaatattgatgatttcccaccaaattaatgggaacagtaccccaattttcttttct 6371
Query: 227 tcgtacattttcaggatcttgatcaatcttccattggttcaagttcgattcaattgctgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372 tcgtacattttcaggatcttgatcaatcttccattggttcaagttcgattcaattgctgc 6431
Query: 287 ttcttctgattctaacgatctcaactcttgttcatatttctccaatttatgcaaattttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6432 ttcttctgattctaacgatctcaactcttgttcatatttctccaatttatgcaaattttt 6491
Query: 347 cttgatcaacccgtctctaggatcaattatgagtgaattgaccgtcttcaaatcgttcaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6492 cttgatcaacccgtctctaggatcaattatgagtgaattgaccgtcttcaaatcgttcaa 6551
Query: 407 acatattaaaatatctttccttattttattcaagtcattattctcatcctcattcgagat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6552 acatattaaaatatctttccttattttattcaagtcattattctcatcctcattcgagat 6611
Query: 467 caatattctcttatgtgcttcctgaagattagataagaggttagttacctcctgttgttg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6612 caatattctcttatgtgcttcctgaagattagataagaggttagttacctcctgttgttg 6671
Query: 527 aagaagtaaatcattaaggtccattattggttgtgatagatattaaagtgtgattgggat 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6672 aagaagtaaatcattaaggtccattattggttgtgatagatattaaagtgtgattgggat 6731
Query: 587 gggaagtggagattgcttcatgctccgncagagttgggaattgnttacaaacgctgtgtt 646
||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct: 6732 gggaagtggagattgcttcatgctccgccagagttgggatttgtttacaaacgctgtgtt 6791
Query: 647 tnctttgttgaaaccagtgcgtttgacttt-gggggggct-ccttttaaaatgatatgtc 704
| |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct: 6792 tcctttgttgaaaccagtgcgtttgactttggggggggctccctttaaaaatgatatgtc 6851
Query: 705 acgtgatatcattgggttccatgtgacaac-attagngacccncaaaaataggatattaa 763
||||||||||||||| | | |||||||||| ||||| || ||||| ||||||||||
Sbjct: 6852 acgtgatatcattggttccaatgtgacaacaattaggagccgccaaaataaggatattaa 6911
Query: 764 gctctgtaacaggtncattacttgagctccttttatggaaatgtttactgtacatcgtta 823
|||||| ||||||| ||| || |||||||||||||| |||||||||||||||||||||||
Sbjct: 6912 gctctgaaacaggttcataac-tgagctccttttattgaaatgtttactgtacatcgtta 6970
Query: 824 gggtttgggatgcatttggttttttattagggaaagaaacaccgttttgctattttg 880
|||||| |||||||| | |||||||| |||||| ||||| ||| ||||| ||||
Sbjct: 6971 -ggtttgtgatgcattgtatattttatta-ggaaaggaacacagttatgctagtttg 7025
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7766
Number of Sequences: 1807
Number of extensions: 7766
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)