BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB10FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1024 1459 0.0
>3x_Contig1024
Length = 3867
Score = 1459 bits (736), Expect = 0.0
Identities = 805/820 (98%), Gaps = 6/820 (0%)
Strand = Plus / Minus
Query: 88 ccagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 ccagatggttcaaaaagggttaattcccctgcatgtttgttattgccaatctgatcaacc 2358
Query: 148 ttggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 ttggactctgcaaaacagcttttctttacattaacccttgtaatattatttaattaatgg 2298
Query: 208 attgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 attgatacgcgttcatgttcaattgatgtccaaactcttgagtatgtttaacgttgattc 2238
Query: 268 ttcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 ttcatcaatggtttgatactttgagcccactccattgtacttccttaagccattggataa 2178
Query: 328 acttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 acttccatcaaaattgaccgcgtctttatcgtattggttaacaggatgcgtagcacttaa 2118
Query: 388 gcgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 gcgcgattgtgtatcaaaagactgtccattccaatattgttggttcaataacgaagacaa 2058
Query: 448 gtccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaact 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 gtccgtgtttggaataaaagatttttcaacgacgttttggccaccgaatgagaccaaact 1998
Query: 508 ttgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 ttgagtgtcaaagtctctctgaccagcatattgtgtataactactgttgttggatggggc 1938
Query: 568 tttcctgggtgccctagaaggtttcgtcaattggactgtgcagagttgtaaattatccaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 tttcctgggtgccctagaaggtttcgtcaattggactgtgcagagttgtaaattatccaa 1878
Query: 628 aaacccttcaacaagacaacccttttctctgaaatgaagtagtagatgactccataagct 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 aaacccttcaacaagacaacccttttctctgaaatgaagtagtagatgactccataagct 1818
Query: 688 attgcgagatagtgccctttggttacccaatattattagaccgtatttagcacgagtcaa 747
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 attgcgagatagtgcccttgggttacccaatattattagaccgtatttagcacgagtcaa 1758
Query: 748 cgcaacatttagacgacgtgggtcactcaagaaaccaatggtgtttctctcatt-gcccg 806
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1757 cgcaacatttagacgacgtgggtcactcaagaaaccaatggtgtttctctcattggcacg 1698
Query: 807 gacacaagacaaaa-aatataggcttttt-tctaccttggaaagc-tctactgatgccat 863
|||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 1697 gacacaagacaaaataatatagtctttttctctaccttggaaagcatctactgatgcca- 1639
Query: 864 cttc-acgcccattttcaatggatttttcatcgacccatt 902
|||| |||||||| | ||||| |||| |||||| |||||
Sbjct: 1638 cttcaacgcccatgtacaatgatttttccatcgaaccatt 1599
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6365
Number of Sequences: 1807
Number of extensions: 6365
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)