BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB11FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1590 1552 0.0
>3x_Contig1590
Length = 13653
Score = 1552 bits (783), Expect = 0.0
Identities = 812/818 (99%), Gaps = 3/818 (0%)
Strand = Plus / Plus
Query: 82 taattcgatcgaacttatactttcttcactgttaaaaccatgtatcactttaaaattttt 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 taattcgatcgaacttatactttcttcactgttaaaaccatgtatcactttaaaattttt 3866
Query: 142 caacattcgtcaaaagctttgaagcttcgaaaactgaaatccagttacagcttttatgat 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3867 caacattcgtcaaaagctttgaagcttcgaaaactgaaatccagttacagcttttatgat 3926
Query: 202 agaagcggtaaatgaagataaactgtcgcgagtagttaagtattcagtggaaggcgaccc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3927 agaagcggtaaatgaagataaactgtcgcgagtagttaagtattcagtggaaggcgaccc 3986
Query: 262 aaggcgattttcgatttaggaagtaaaccgatatacttacggaaaattaagtaaggctta 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3987 aaggcgattttcgatttaggaagtaaaccgatatacttacggaaaattaagtaaggctta 4046
Query: 322 tcaagacatcaaaaggaaaacaatggggaagagtagtaaagataaacgtgatctgtacta 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4047 tcaagacatcaaaaggaaaacaatggggaagagtagtaaagataaacgtgatctgtacta 4106
Query: 382 cagaaaggctaaggaacaaggataccgtgcgagatccgctttcaagttattacagttaga 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4107 cagaaaggctaaggaacaaggataccgtgcgagatccgctttcaagttattacagttaga 4166
Query: 442 cgacgactttcattttttgcagcaggctgtacgagtggtggacctttgcgctgctccggg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4167 cgacgactttcattttttgcagcaggctgtacgagtggtggacctttgcgctgctccggg 4226
Query: 502 atcttggtctcaggtcttgtctagaagactatttcctcagagttcagataattcagatag 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4227 atcttggtctcaggtcttgtctagaagactatttcctcagagttcagataattcagatag 4286
Query: 562 aaagattgttgcagttgatttgcagcccatgtcaccgatcgataatgtaatcacattaca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287 aaagattgttgcagttgatttgcagcccatgtcaccgatcgataatgtaatcacattaca 4346
Query: 622 ggcggatattacacatcctaaaactctacaaaccataaccgagctttttgagggtaagaa 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4347 ggcggatattacacatcctaaaactctacaaaccataaccgagctttttgagggtaagaa 4406
Query: 682 agctgattntatttgtagcgatggtgcgccagatgtcaccggtttacacgatttagacga 741
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4407 agctgattttatttgtagcgatggtgcgccagatgtcaccggtttacacgatttagacga 4466
Query: 742 gtatgttcaacagcagttaattttaagcgcattacagctatctacctgttttgttaagaa 801
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4467 gtatgttcaacagcagttaattttaagcgcattacagctatctacctg-tttgttaagaa 4525
Query: 802 aaggtgggaaattttgttgccaaaatatttagaggaagagatatagacaggttgtattct 861
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 4526 aaggt-ggaaattttgttgccaaaatatttagaggaagagatatagacatgttgtattct 4584
Query: 862 tagcttggatatc-ttttgagaaagttatttgcgctaa 898
|||||||||||| ||||||||||||||||||||||||
Sbjct: 4585 cagcttggatatctttttgagaaagttatttgcgctaa 4622
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5955
Number of Sequences: 1807
Number of extensions: 5955
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)