BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZB11RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1343 1649 0.0
>3x_Contig1343
Length = 6877
Score = 1649 bits (832), Expect = 0.0
Identities = 857/864 (99%), Gaps = 1/864 (0%)
Strand = Plus / Minus
Query: 48 tcgtcacccaacaagaagaattgccattcaaggtcttgtctggttctccaggttacatta 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 tcgtcacccaacaagaagaattgccattcaaggtcttgtctggttctccaggttacatta 1055
Query: 108 acttgttggatgctttgaactcttggccattggttaaggaattgtctgcatctctaaact 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 acttgttggatgctttgaactcttggccattggttaaggaattgtctgcatctctaaact 995
Query: 168 tgccagctgctgcctctttcaagcacgtttccccagccggtgcagccgttggtttgccat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 tgccagctgctgcctctttcaagcacgtttccccagccggtgcagccgttggtttgccat 935
Query: 228 tatccgacgtcgaaaaacaaatctactttgttgctgatattgagaacttatctcccttgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tatccgacgtcgaaaaacaaatctactttgttgctgatattgagaacttatctcccttgg 875
Query: 288 cttgtgcttatgcaagagcccgtggtgccgacagaatgtcctctttcggtgactggattg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cttgtgcttatgcaagagcccgtggtgccgacagaatgtcctctttcggtgactggattg 815
Query: 348 ccttgtccaacatcgttgacgtcccaactgccaagatcatttctcgtgaagtctctgatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ccttgtccaacatcgttgacgtcccaactgccaagatcatttctcgtgaagtctctgatg 755
Query: 408 gtgttattgctccagggtttgaaccagaagctctagaaattttgaagaagaagaagaatg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gtgttattgctccagggtttgaaccagaagctctagaaattttgaagaagaagaagaatg 695
Query: 468 gtaagtactgtattttacaaattgatccaaactacactccagaagcattggaatccagac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gtaagtactgtattttacaaattgatccaaactacactccagaagcattggaatccagac 635
Query: 528 aagtctacggtgtcactctacagcaaaagagaaatgatgctattataaataaatcttcct 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 aagtctacggtgtcactctacagcaaaagagaaatgatgctattataaataaatcttcct 575
Query: 588 tcaaagagatcgtttctcaaaacaaggacttgccagaacaagcagttattgatttgaccg 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcaaagagatcgtttctcaaaacaaggacttgccagaacaagcagttattgatttgaccg 515
Query: 648 ttgccacgatcgctctaaagtacacccaatccaactctgtttgctacgcaaagaacggta 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ttgccacgatcgctctaaagtacacccaatccaactctgtttgctacgcaaagaacggta 455
Query: 708 tggttgttggtttgggtgctggtcaacaatcaagaatccactgtactagattggcaggtg 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tggttgttggtttgggtgctggtcaacaatcaagaatccactgtactagattggcaggtg 395
Query: 768 acaaggcagacaattggtggttaagacaacacccaagagtccctagtttcaagtgggcca 827
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 394 acaaggcagacaattggtggttaagacaacacccaagagtcctaggtttcaagtgggcca 335
Query: 828 agggtgtcaagagaccagaaaagtccaatgccattgatttattcgtcactgttcaaatt- 886
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 334 agggtgtcaagagaccagaaaagtccaatgccattgatttattcgtcactggtcaaattc 275
Query: 887 caactgaaggacccgaaaaatcag 910
||||||||| ||| ||||||||||
Sbjct: 274 caactgaagaaccagaaaaatcag 251
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7819
Number of Sequences: 1807
Number of extensions: 7819
Number of successful extensions: 255
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)