BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC01FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1736 1132 0.0
>3x_Contig1736
Length = 21222
Score = 1132 bits (571), Expect = 0.0
Identities = 613/623 (98%), Gaps = 3/623 (0%)
Strand = Plus / Plus
Query: 72 taataatgtaaat-atatagcttgttactccaagactaagctttcggtaagtttcttgaa 130
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14789 taataatgtaaatcatatagcttgttactccaagactaagctttcggtaagtttcttgaa 14848
Query: 131 tttcgtacctttcttcagcttcttctgagttttcaatataaacgagtactgtgtgaaaaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14849 tttcgtacctttcttcagcttcttctgagttttcaatataaacgagtactgtgtgaaaaa 14908
Query: 191 ttcagtctcgaatggatttccgatgagcataaacgacaaaaattatggaaaacatccata 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14909 ttcagtctcgaatggatttccgatgagcataaacgacaaaaattatggaaaacatccata 14968
Query: 251 tatatatatatatatataaggtatgataagcgaaagtgaatttggcgatgagctactaat 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14969 tatatatatatatatataaggtatgataagcgaaagtgaatttggcgatgagctactaat 15028
Query: 311 ccaaaggttgagaaagtgaaatataacggagagaaattatctttttggagtaaattgtct 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15029 ccaaaggttgagaaagtgaaatataacggagagaaattatctttttggagtaaattgtct 15088
Query: 371 tgtgttccgaaactagtaattcgccatgaagcttttgaaaattgcactattactaggtac 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15089 tgtgttccgaaactagtaattcgccatgaagcttttgaaaattgcactattactaggtac 15148
Query: 431 agcgtactatctgttgaacagtttactatatacctggttgccaaccaactacatttttga 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15149 agcgtactatctgttgaacagtttactatatacctggttgccaaccaactacatttttga 15208
Query: 491 tgcatagacattgaacgagatatcctattctgttatcagcaaatatgacgctgaatccga 550
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 15209 tgcaaagacattgaacgagatatccaattctgttatcagcaaatatgacgctgaatccga 15268
Query: 551 aacattcgatgttaatgtgatgctaaaagatttaagagatgcattggccaaacattacgg 610
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15269 aacattcgatgttaaggtgatgctaaaagatttaagagatgcattggccaaacattacgg 15328
Query: 611 tgatgactatatcaacccatgggtttgttgaagaatgggtgttcaacaatgctggtggtg 670
||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 15329 tgatgactatatcaaccaatggg-ttgatgaagaatgggtgttcaacaatgctggtggtg 15387
Query: 671 ccactgggtaatatgattatctt 693
||| ||||| | |||||||||||
Sbjct: 15388 cca-tgggtcaaatgattatctt 15409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,521
Number of Sequences: 1807
Number of extensions: 13521
Number of successful extensions: 2272
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)