BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC02FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1584 0.0
>3x_Contig1770
Length = 29267
Score = 1584 bits (799), Expect = 0.0
Identities = 806/807 (99%), Gaps = 1/807 (0%)
Strand = Plus / Minus
Query: 87 ctgtgctgtcgcctacactctcccccgttggatactataccaaggaaattaccactgaag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14268 ctgtgctgtcgcctacactctcccccgttggatactataccaaggaaattaccactgaag 14209
Query: 147 atggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagctcca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14208 atggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagctcca 14149
Query: 207 ttgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgttttgtgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14148 ttgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgttttgtgc 14089
Query: 267 ttttattggattggattaatgaggatcagtcctattggttggaagacattgaagggctgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14088 ttttattggattggattaatgaggatcagtcctattggttggaagacattgaagggctgt 14029
Query: 327 tcgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatgttac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14028 tcgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatgttac 13969
Query: 387 acagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgctatcg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13968 acagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgctatcg 13909
Query: 447 atttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttattcag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13908 atttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttattcag 13849
Query: 507 acttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctacagaag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13848 acttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctacagaag 13789
Query: 567 aacagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggctctg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13788 aacagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggctctg 13729
Query: 627 actctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataaggaca 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13728 actctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataaggaca 13669
Query: 687 acttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaaggaata 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13668 acttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaaggaata 13609
Query: 747 tgggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctcttatcc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13608 tgggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctcttatcc 13549
Query: 807 cagatgttcaagggcagttgtcccatttatatgagttac-aaggaaaaattcttccttga 865
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 13548 cagatgttcaagggcagttgtcccatttatatgagttacaaaggaaaaattcttccttga 13489
Query: 866 aaagagtcaccaatcaaccagcagtgg 892
|||||||||||||||||||||||||||
Sbjct: 13488 aaagagtcaccaatcaaccagcagtgg 13462
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5620
Number of Sequences: 1807
Number of extensions: 5620
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)