BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZC02RM1.SCF screened BAC_end (910 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig220 829 0.0 3x_Contig1347 125 2e-28 >3x_Contig220 Length = 1055 Score = 829 bits (418), Expect = 0.0 Identities = 442/446 (99%), Gaps = 3/446 (0%) Strand = Plus / Minus Query: 54 taaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtggatga 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 taaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtggatga 393 Query: 114 agagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaagagga 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 agagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaagagga 333 Query: 174 aagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctctcgga 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 aagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctctcgga 273 Query: 234 agagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcagacag 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 agagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcagacag 213 Query: 294 acaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagaggaaag 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 acaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagaggaaag 153 Query: 354 gaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagctctag 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 gaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagctctag 93 Query: 414 gaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccattgtt- 470 |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct: 92 gaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccattgttg 33 Query: 471 atttgattcgatcttgcccattcttc 496 ||||||||| |||||||||||||||| Sbjct: 32 atttgattctatcttgcccattcttc 7 >3x_Contig1347 Length = 6130 Score = 125 bits (63), Expect = 2e-28 Identities = 87/93 (93%), Gaps = 4/93 (4%) Strand = Plus / Plus Query: 822 acgattggtttgtagatcgaaaa-gagctggag---gcaagacatactgggataaagata 877 ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| Sbjct: 4 acgattggtttgtagatcgaaaaagagctagagaaggcaagacatactgggataaagata 63 Query: 878 attcagcaaattgctattttagtaggaattggt 910 |||||||||||||||||||||||||| |||||| Sbjct: 64 attcagcaaattgctattttagtagggattggt 96 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6500 Number of Sequences: 1807 Number of extensions: 6500 Number of successful extensions: 41 Number of sequences better than 1.0e-20: 2 length of query: 910 length of database: 10,358,551 effective HSP length: 16 effective length of query: 894 effective length of database: 10,329,639 effective search space: 9234697266 effective search space used: 9234697266 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)