BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZC02RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig220                                                          829   0.0  
3x_Contig1347                                                         125   2e-28

>3x_Contig220 
          Length = 1055

 Score =  829 bits (418), Expect = 0.0
 Identities = 442/446 (99%), Gaps = 3/446 (0%)
 Strand = Plus / Minus

                                                                       
Query: 54  taaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtggatga 113
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taaacagtctgattatcataagagaaggttccttaggaatttggatgaagaagtggatga 393

                                                                       
Query: 114 agagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaagagga 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agagcaagtgaaagatgtgaaaagaaggaaaaccgataaggatggtgataaggaagagga 333

                                                                       
Query: 174 aagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctctcgga 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagtggcggtggatatacgatgcccaagacttcgcagcatattataactgagctctcgga 273

                                                                       
Query: 234 agagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcagacag 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agagatggttactgaagttccaggggtacgtaatcttcagttctttaagccttcagacag 213

                                                                       
Query: 294 acaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagaggaaag 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 acaacatttcgcaattttgtttgatgaaaggtctccagaagatatgactgaagaggaaag 153

                                                                       
Query: 354 gaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagctctag 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaaacagaaacaggttttaaaattggtacttaaggtgaaaaatgggttaccaagctctag 93

                                                                       
Query: 414 gaaaatagctctcagagcactcactcaaaaggcacc-ctcttt-cggggcaccattgtt- 470
           |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| 
Sbjct: 92  gaaaatagctctcagagcactcactcaaaaggcacctctctttgcggggcaccattgttg 33

                                     
Query: 471 atttgattcgatcttgcccattcttc 496
           ||||||||| ||||||||||||||||
Sbjct: 32  atttgattctatcttgcccattcttc 7


>3x_Contig1347 
          Length = 6130

 Score =  125 bits (63), Expect = 2e-28
 Identities = 87/93 (93%), Gaps = 4/93 (4%)
 Strand = Plus / Plus

                                                                       
Query: 822 acgattggtttgtagatcgaaaa-gagctggag---gcaagacatactgggataaagata 877
           ||||||||||||||||||||||| ||||| |||   ||||||||||||||||||||||||
Sbjct: 4   acgattggtttgtagatcgaaaaagagctagagaaggcaagacatactgggataaagata 63

                                            
Query: 878 attcagcaaattgctattttagtaggaattggt 910
           |||||||||||||||||||||||||| ||||||
Sbjct: 64  attcagcaaattgctattttagtagggattggt 96


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6500
Number of Sequences: 1807
Number of extensions: 6500
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 2
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)