BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC03FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1345 1433 0.0
>3x_Contig1345
Length = 7291
Score = 1433 bits (723), Expect = 0.0
Identities = 828/854 (96%), Gaps = 7/854 (0%)
Strand = Plus / Plus
Query: 88 caattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttcccct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2278 caattaagacttcaggaggctaaaaagcaggagagacttgagaaggcaaaaatttcccct 2337
Query: 148 caagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaactaaa 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2338 caagatatgtttaagaatgacctatattccgaatgggatgaagatggaattccaactaaa 2397
Query: 208 gataaagatggtttctaagttactaaatcaatgaataaaaagttaaaaaaacaatggttg 267
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2398 gataaagatggtaacgaagttactaaatcaatgaataaaaagttaaaaaaacaatggttg 2457
Query: 268 gctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgcttttac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2458 gctcaaaagaaactccatgaagagtttttccagtagtgaagctaaatgtgttgcttttac 2517
Query: 328 taattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgtat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2518 taattatttaattttatagatatatctctttgtgtttatttttgaattgtgcagttgtat 2577
Query: 388 tgagtttatgcaaatg-aagatcttaaatttttttctttttgttaacgaattcttaagta 446
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2578 tgagtttatgcaaatgcaagatcttaaatttttttctttttgttaacgaattcttaagta 2637
Query: 447 tcttacaattagcatattttatttctttattgggatgattgactactatatattataagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2638 tcttacaattagcatattttatttctttattgggatgattgactactatatattataagc 2697
Query: 507 tataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgtact 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2698 tataacgccaagcaaccaaacaacaattatgtgcattgcaaactcagtatggtatgtact 2757
Query: 567 aagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaattga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758 aagataaatcaatttagattttgtgttcactgctgttttaatactaacatttgaaattga 2817
Query: 627 tcctttcttttgctcgtgttcagtggaaatgctttcagaggtttagcggagtgtgaggac 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2818 tcctttcttttgctcgtgttcagtggaaatgctttcagaggtttagcggagtgtgaggac 2877
Query: 687 gaaatggcactagctgaaaacgaggccgagttgtataagattaaacttatggctcctgtt 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2878 gaaatggcactagctgaaaacgaggccgagttgtataagattaaacttatggctcctgtt 2937
Query: 747 tntgataaaaagagata-gttaatcgagaagattccgttcttttggaatattgcttttac 805
| |||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 2938 tttgataaaa-gagataagttaatcgagaagattccgttcttttggaatatcgctttaac 2996
Query: 806 ctcacattcaggatttttcaaattacgttagagcatcagattttaagtacattggagctt 865
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2997 tcaacattcag-atttttcaaattacgttagagcatcagattttaagtacattgaagcta 3055
Query: 866 ttaagaaaatagttggcaaggccattggcacttggaaaattatgaatgcccccgggaggt 925
| ||||||||||||| |||| ||||||||||||| || || | |||||| || | ||||
Sbjct: 3056 taaagaaaatagttgtcaag-ccattggcacttg-aagatgaggaatgcacc-gcgaggg 3112
Query: 926 attttcaaatcact 939
||||||||||||||
Sbjct: 3113 attttcaaatcact 3126
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8904
Number of Sequences: 1807
Number of extensions: 8904
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)