BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC05FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1785 1584 0.0
>3x_Contig1785
Length = 37935
Score = 1584 bits (799), Expect = 0.0
Identities = 829/835 (99%), Gaps = 3/835 (0%)
Strand = Plus / Plus
Query: 87 tgtaattaacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatatt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9496 tgtaattaacgtacaaaactacattttctgaaagcgtggggaaacaatagagaacatatt 9555
Query: 147 gcattaagaggccggaataaaaggtttagtacggagattaacatgtgcatagaggatttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9556 gcattaagaggccggaataaaaggtttagtacggagattaacatgtgcatagaggatttt 9615
Query: 207 cgttctaacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9616 cgttctaacttttaaacgatggaacatagatcaagtaacatagtaattggacctcataac 9675
Query: 267 ttgacaacagggataaactatattacttgatatcacttgtcgcacatggattcaacaatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9676 ttgacaacagggataaactatattacttgatatcacttgtcgcacatggattcaacaatc 9735
Query: 327 ggtctctgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9736 ggtctctgatagattaagggttgcgtctttgtctgtattcgaaaacgaattaaatgtagt 9795
Query: 387 tataggtaaatagttagttatatctagagaaatactcgtacatccatagtcaggccatcc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9796 tataggtaaatagttagttatatctagagaaatactcgtacatccatagtcaggccatcc 9855
Query: 447 accaaaatagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9856 accaaaatagtttcttttcagttttttttgtttttccgctttgcatttaaatgccaattg 9915
Query: 507 aaccattgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9916 aaccattgaaaagggatgtcttaaaggaaatgaaagaaaggggagccttaaccaccttga 9975
Query: 567 atgaagaattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9976 atgaagaattgtgaaagtttcagatacaattgttacaattgttcaaggccaacctatcaa 10035
Query: 627 atataatagcagttaattgattgactattttaacttgaaaggaagctatatatattttta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10036 atataatagcagttaattgattgactattttaacttgaaaggaagctatatatattttta 10095
Query: 687 agggccttgcaagcggttttttagactaagaataagaaaagataagccaagatgggttcc 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10096 agggccttgcaagcggttttttagactaagaataagaaaagataagccaagatgggttcc 10155
Query: 747 ggtactgctagaagacctagcttgagcacttccacatccaatgacatgatggttgacgag 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10156 ggtactgctagaagacctagcttgagcacttccacatccaatgacatgatggttgacgag 10215
Query: 807 cctcatgttgtgcctcgtctttcccgtcgtttgactggggtttttgcctcagaaaatt-a 865
||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
Sbjct: 10216 cctcatggtgtgcctcgtctttcccgtcgtttgact-gggtttttgcctcaggaaattaa 10274
Query: 866 gagtattaatactttgattcctttgcagagtagaagaaatttggaaaaaacatgg 920
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 10275 gagtattaatactatgattcctttgcagagtag-agaaatttggaaaaaacatgg 10328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7267
Number of Sequences: 1807
Number of extensions: 7267
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)