BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC05RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1214 1606 0.0
>3x_Contig1214
Length = 6334
Score = 1606 bits (810), Expect = 0.0
Identities = 850/860 (98%), Gaps = 3/860 (0%)
Strand = Plus / Plus
Query: 51 agaagttgcttccaagacaaacgaagctgccggtgacggtaccacttctgccactgtctt 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4723 agaagttgcttccaagacaaacgaagctgccggtgacggtaccacttctgccactgtctt 4782
Query: 111 aggtaaggccattttcactgaatccgttaagaatgttgcagctggttgtaacccaatgga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4783 aggtaaggccattttcactgaatccgttaagaatgttgcagctggttgtaacccaatgga 4842
Query: 171 tttgagaagaggtactcaagctgctgtcgaaaaagtaattcaatacttgtcagagaacaa 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843 tttgagaagaggtactcaagctgctgtcgaaaaagtaattcaatacttgtcagagaacaa 4902
Query: 231 gaaagaaatcaccacttctgctgaaatcgctcaagtggcaactatttctgccaacgggga 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4903 gaaagaaatcaccacttctgctgaaatcgctcaagtggcaactatttctgccaacgggga 4962
Query: 291 tgctcacgttggtaagttgttggcttcagccatggaaaaagttggtaaggaaggtgtcat 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4963 tgctcacgttggtaagttgttggcttcagccatggaaaaagttggtaaggaaggtgtcat 5022
Query: 351 cactatcagagagggtagaaccttggaagatgaattggaagtcactgaaggtatgagatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5023 cactatcagagagggtagaaccttggaagatgaattggaagtcactgaaggtatgagatt 5082
Query: 411 cgaccgtggtttcatttctccatactttattaccgacgctaaatctggtaaggtggaatt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5083 cgaccgtggtttcatttctccatactttattaccgacgctaaatctggtaaggtggaatt 5142
Query: 471 tgaaaaacctttgatcttattgagtgaaaagaagatctcctcaatccaggatatcttgcc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5143 tgaaaaacctttgatcttattgagtgaaaagaagatctcctcaatccaggatatcttgcc 5202
Query: 531 ttctttggaattgtcaaaccaaaccagaagaccattgttgatcatcgccgaagatattga 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5203 ttctttggaattgtcaaaccaaaccagaagaccattgttgatcatcgccgaagatattga 5262
Query: 591 tggcgaagctttggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgc 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5263 tggcgaagctttggctgcttgtattttgaacaagttgagaggtcaagttcaagtttgtgc 5322
Query: 651 cgttaaagctccaggtttcggtgataacaggaagaacaccttgggcgatattgccatctt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5323 cgttaaagctccaggtttcggtgataacaggaagaacaccttgggcgatattgccatctt 5382
Query: 711 gtctggtggtactgtcttcactgaagaattggacctaaagccagaaaacgctaccatcca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5383 gtctggtggtactgtcttcactgaagaattggacctaaagccagaaaacgctaccatcca 5442
Query: 771 acatttgggttcttgtgattctgtttctattaccaaagaagataccgntatcttgaatgg 830
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 5443 acatttgggttcttgtgattctgtttctattaccaaggaagataccgttatcttgaatgg 5502
Query: 831 taacggtccanaag-aaacatcgaaacca-aatttgacaaatcaggaactctattgactt 888
|||||||||| ||| |||||||||||||| |||| |||||||| |||||||||||||||
Sbjct: 5503 taacggtccaaaagaaaacatcgaaaccagaattgaacaaatcaagaactctattgactt 5562
Query: 889 gacc-ctaccaactcttacg 907
|||| ||||||| |||||||
Sbjct: 5563 gaccactaccaagtcttacg 5582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7109
Number of Sequences: 1807
Number of extensions: 7109
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)