BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC06FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1093 1419 0.0
>3x_Contig1093
Length = 5169
Score = 1419 bits (716), Expect = 0.0
Identities = 831/859 (96%), Gaps = 8/859 (0%)
Strand = Plus / Plus
Query: 87 ttacaggatatgggtaacaatgaagaatctataacagttggtttcaacgaaatcgtcgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 ttacaggatatgggtaacaatgaagaatctataacagttggtttcaacgaaatcgtcgat 1124
Query: 147 cttttaagccatgggaaagatgaatatatgctgttcgtatgcaataaagatttgccgtca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 cttttaagccatgggaaagatgaatatatgctgttcgtatgcaataaagatttgccgtca 1184
Query: 207 gttttaatttcgcagttacctatcttatgtgaaacctcggaccatacagtgacgcttgtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1185 gttttaatttcgcagttacctatcttatgtgaaacctcggaccatacagtgacgcttgtc 1244
Query: 267 caattacctcgactctcgtcggccaagttcgatgacgcgttcagggatgtagtgcatgac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 caattacctcgactctcgtcggccaagttcgatgacgcgttcagggatgtagtgcatgac 1304
Query: 327 ggtatgtgtcttgtgcgcacacatgctcattatcaggattttgcaaagatgatctctacc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1305 ggtatgtgtcttgtgcgcacacatgctcattatcaggattttgcaaagatgatctctacc 1364
Query: 387 aaagtggaaccattatccataccatggctgcattctgcacagttcaaaaaggctcccgtc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1365 aaagtggaaccattatccataccatggctgcattctgcacagttcaaaaaggctcccgtc 1424
Query: 447 aagctattggcaaccaccgcaccgatcataaagaaacaagggaaacaagggaaacaagtg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1425 aagctattggcaaccaccgcaccgatcataaagaaacaagggaaacaagggaaacaagtg 1484
Query: 507 ccatcctaaatggtaattgggctctccattttctgtccacgtgacctttataagcccatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1485 ccatcctaaatggtaattgggctctccattttctgtccacgtgacctttataagcccatt 1544
Query: 567 tttcccacagatttcaccatctaaattttccagaaattttcattaaccgtcgagatgaca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1545 tttcccacagatttcaccatctaaattttccagaaattttcattaaccgtcgagatgaca 1604
Query: 627 ttaaaacagagatgcatatatatatatgggaaccaatatcgttgacggtttttacagtta 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1605 ttaaaacagagatgcatatatatatatgggaaccaatatcgttgacggtttttacagtta 1664
Query: 687 cgtttatctcccggcaaccgtntactaacgcttctttaggc-ttgtggtcgcatactgag 745
||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 1665 cgtttatctcccggcaaccgtttactaacgcttctttaagctttgtggtcgcatactgag 1724
Query: 746 tttagttg-attcagacc-agtgtgtgtctaa-tcttagtgtgt-gattgggtgcttgcg 801
|||||||| ||||||||| ||||||||||||| ||| ||||||| |||||| ||||||||
Sbjct: 1725 tttagttgtattcagaccaagtgtgtgtctaattctcagtgtgtggattggttgcttgcg 1784
Query: 802 ctttctttggttttaaaggaaatcg-attgc-taaat-aggtttcgtcttatcagaacca 858
||||||||| || | |||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct: 1785 ctttctttgcttctcaaggaaatcgaattgcttaaataaggtttcgtcttatcagaacca 1844
Query: 859 tgggaagtttaaacccttaaaactggccctgggtcgataaaaattccttgggattgacca 918
||| | |||||||||| | ||||||| |||||||||||||||| | |||||| |||||
Sbjct: 1845 tggtagttttaaaccctaacaactggcactgggtcgataaaaatacactgggatggacca 1904
Query: 919 accattttttgaaacgtcg 937
|| ||| |||||| |||||
Sbjct: 1905 acgattatttgaatcgtcg 1923
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8004
Number of Sequences: 1807
Number of extensions: 8004
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)