BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC06RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1499 0.0
>3x_Contig1780
Length = 27883
Score = 1499 bits (756), Expect = 0.0
Identities = 851/872 (97%), Gaps = 8/872 (0%)
Strand = Plus / Minus
Query: 47 atctacttagagactatattccaactaaaaaaccgtactctttagattccctattagacg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5186 atctacttagagactatattccaactaaaaaaccgtactctttagattccctattagacg 5127
Query: 107 atttgttggattacgcaagtcaaagactccccattaatggtagattggctttctggatgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5126 atttgttggattacgcaagtcaaagactccccattaatggtagattggctttctggatgc 5067
Query: 167 ccactgccaatgacgagaatgttgcaactataattcctcttcattcgaatttggaactga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5066 ccactgccaatgacgagaatgttgcaactataattcctcttcattcgaatttggaactga 5007
Query: 227 agtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatcaata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5006 agtataactgtgttcaagatttcaataaatggtctagaagattattggtgtatatcaata 4947
Query: 287 gaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttcagag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4946 gaggacacgaatttaatggacccaacaattctggtttgagtagaactggtaatttcagag 4887
Query: 347 atagatacttcagcgggttcaattgatattattggacctgatataaggctaataatagac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4886 atagatacttcagcgggttcaattgatattattggacctgatataaggctaataatagac 4827
Query: 407 atctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaatat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4826 atctgctcactctagcattacactataatatgtatcattagttaaaatacaaattaatat 4767
Query: 467 ttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatattat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4766 ttataaaatcgatattattacatttattatacacaaagttacaatgactgacaatattat 4707
Query: 527 acaatattatacatattccttgcatatcatcttccactgccaatacttggtatcatgacg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 acaatattatacatattccttgcatatcatcttccactgccaatacttggtatcatgacg 4647
Query: 587 ctataacttgaaattcattactaagtgcagcaggaactcgtggagcctgggtttgaacca 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 ctataacttgaaattcattactaagtgcagcaggaactcgtggagcctgggtttgaacca 4587
Query: 647 tcgtcgttttggttattcaatggtttattcaaatccacagtttttggatttattcttcat 706
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4586 tcgtcgttttggttattcaatggtttattcaaatccacag-ttttggatttattcttcat 4528
Query: 707 ttatctctgtcgcacgccacccgggagtgcctggaatatcctccaaactactttcactat 766
| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 4527 taatctctgtcgcacgcca-cggggagtgcctggaatatcctccaaactactttcactat 4469
Query: 767 cttctgattggtctgatgaaattactcttagctctctgtcatcctcatacaacccgcttt 826
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 4468 cttctgattggtctgatgaaattactctaagctctctgtcatcctcataacacccgcttt 4409
Query: 827 -taccaaaactttaaatataatattggaagggcctttctaccaca-tctccctattttc- 883
||||||| |||||| |||||||| ||| | ||||||||||||| |||||| |||| |
Sbjct: 4408 ctaccaaatctttaataataatatt-gaatgtcctttctaccacattctccc-atttaca 4351
Query: 884 actaacttc-aagatacctgaaatttttatat 914
||||||||| ||| ||||||| ||||||||||
Sbjct: 4350 actaacttcaaagttacctgatatttttatat 4319
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7675
Number of Sequences: 1807
Number of extensions: 7675
Number of successful extensions: 71
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)