BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC07FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 997 0.0
>3x_Contig1661
Length = 14612
Score = 997 bits (503), Expect = 0.0
Identities = 597/623 (95%), Gaps = 4/623 (0%)
Strand = Plus / Minus
Query: 88 ttcctcattctctgtatctacattatttgaaagaagtttcccccaacggttccctctatt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7743 ttcctcattctctgtatctacattatttgaaagaagtttcccccaacggttccctctatt 7684
Query: 148 tggaacatgaggtagttctgctgatgcagaagaggcagttgacagaggtgccgcaatatc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7683 tggaacatgaggtagttctgctgatgcagaagaggcagttgacagaggtgccgcaatatc 7624
Query: 208 aacaggagcggttttctctagcaaaggatcctcgtttcctctttcctttggaattatttg 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7623 aacaggagcgggtttctctagcaaaggatcctcgtttcctctttcctttggaattatttg 7564
Query: 268 tagtgcaaagtcagatttagaacccttgggacaagaaatacaccaattaacgtcattaaa 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7563 tagtgcaaagtcagatttagaacccttgggacaagaaatacaccaattaacgtcattaaa 7504
Query: 328 gtagatgttcatggaagtcttattaggtttcattgctctttggaagagttcaatgacaaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7503 gtagatgttcatggaagtcttattaggtttcattgctctttggaagagttcaatgacaaa 7444
Query: 388 acttggagttaggatgggaatatgatgagcttgcttaacgaattcaattttccgtttcat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7443 acttggagttaggatgggaatatgatgagcttgcttaacgaattcaattttccgtttcat 7384
Query: 448 tgaatttctaaacatttgagcttgatttacagagatcttcatatccaaatctgtcctgaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7383 tgaatttctaaacatttgagcttgatttacagagatcttcatatccaaatctgtcctgaa 7324
Query: 508 cattgacgcgttcttattttgccttaaatgttgttcctgtggtattgaagtcaattggga 567
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 7323 cattgacgcgtacttattttgccttaaagtatgttcctgtggtattgaagtcaattggga 7264
Query: 568 gatgttaacgagttagatatccgtcttcttttttaatttttcatgatggtcattaccaat 627
||||||||||||| ||| |||||||||||| | ||||| |||||||||||| ||||||
Sbjct: 7263 gatgttaacgagtaagaaatccgtcttcttcgtcaatttctcatgatggtcaaaaccaat 7204
Query: 628 c-actttcaaaagtctat-attttatcgatgggt-ctaattccccgccctggaaccctgt 684
| |||| |||||||||| ||||||| |||| || ||||||| |||| |||||||||||
Sbjct: 7203 caacttcaaaaagtctataattttattgatgtgtagtaattccacgccatggaaccctgt 7144
Query: 685 gttttgg-aggaaagtttagggc 706
| | ||| |||||||||||||||
Sbjct: 7143 gatatggaaggaaagtttagggc 7121
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,702
Number of Sequences: 1807
Number of extensions: 10702
Number of successful extensions: 140
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)