BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC07RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1665 1106 0.0
>3x_Contig1665
Length = 15710
Score = 1106 bits (558), Expect = 0.0
Identities = 628/645 (97%), Gaps = 5/645 (0%)
Strand = Plus / Plus
Query: 78 atgtatttgagaagtgtatgtagtgacagagaaccaaacaatgcaacaccataaatgtag 137
|||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||||
Sbjct: 51 atgtatttgagaagtgtatgtagtgaaagagaaaaaaacaatgaaacaaaataaatgtag 110
Query: 138 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ccaaaatgtactttccctgctgtaagtaataatattccgaacattaaccaaaagataatg 170
Query: 198 ggcccagcaagatcggaatcctcctggatttctttcgataaacctttgtgagaaagcggt 257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 171 ggcccagcaagatcggaatcctcctggatgtctttcgataaacctttgtgagaaagcggt 230
Query: 258 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actaacacaaattttgtcttagcaattatacggttgaaattgattcccaattcttcaagc 290
Query: 318 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aaagaaggttcgaatgaatacccacgggtagataaggcattaaaaagacctggtgtcaac 350
Query: 378 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgctcatttgtgaaattagctggcgtaccactaggtttactgccaccgaaatccatgcca 410
Query: 438 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gatccctgcatcccatttccaaaagccatagatccttgagggaacgaatactgttgtgat 470
Query: 498 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ggctggtaaaacccgttcgtgttactatttgcatcaatggagggaattgaaggttggtga 530
Query: 558 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tatgacatcttttattcgatatttattggtccaggagaggaaagacaaaaacacaaagtc 590
Query: 618 aagccattttgcttgtgatgctcaacgtattaagatatatgctgggatntgctttggctg 677
|||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct: 591 aagcaattttgcttgtgatgctcaacgtattaagatatatgct-ggatttgc-ttggctt 648
Query: 678 ttatcaaagttaatctggctggctttgttcattggttttcacggc 722
||||||| ||| ||||| || |||||||||||| |||||||||||
Sbjct: 649 ttatcaaggtt-atctgtct-gctttgttcatt-gttttcacggc 690
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6753
Number of Sequences: 1807
Number of extensions: 6753
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)