BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC08FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1224 1536 0.0
>3x_Contig1224
Length = 5948
Score = 1536 bits (775), Expect = 0.0
Identities = 803/812 (98%), Gaps = 1/812 (0%)
Strand = Plus / Plus
Query: 87 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3894 tgaagtccaaatcacgaaccataagccgactgaacataaatttgcatctgaagagtcaaa 3953
Query: 147 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3954 ttgactccagttttcagtgaaagggttgatactatcacaagaacctacattactgttcaa 4013
Query: 207 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4014 attccagtcagtactgttgcatccgcctattcggctaccagtaccgaaatcaggactatt 4073
Query: 267 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4074 aatacctcttgttttaggtgaatatgctcgtgtaatgtaacagaatatggtgtcgatttt 4133
Query: 327 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4134 ggataatggtacaatagatagaaaaattgttgttacaatggacactgtcaatgaaataaa 4193
Query: 387 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4194 tgaaattatagtcaaaatattctcattaataagtcttttcctcgatatatgaaaaagcga 4253
Query: 447 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4254 caaaatacctgatggcggtattatgtttaaaagaagcatgaaaattagtataaataatct 4313
Query: 507 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4314 tgattttgtgggttttcggagatttgaatcgcgtgggacaaaaaacatttcaccaataat 4373
Query: 567 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4374 cgcagatatggtaatcaagcacgagaatgtacctgccaacgacataactgagaataaaac 4433
Query: 627 gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4434 gaataactcagggtcattgtccaaagtttgtatataatgttttgtgaacaacggttttag 4493
Query: 687 gtttataacaganaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaatt 746
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4494 gtttatcacagaaaaataccaaaaagtggcaacgtgaatggtccaaattctatggaaatt 4553
Query: 747 cgtgatcaaatggtaccaagtacgtgattcaatatangttttccgntaggattttgacca 806
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 4554 cgtgatcaaatggtaccaagtacgtgattcaatataggttttccgtaaggattttgacca 4613
Query: 807 ttcaatctgtgtgaacttagaatatttcatatcccgccgtagatcggcatagttggtacc 866
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 4614 ttcaatctgtgtgaacttagaatatttcatatcccgcggtagatcggcatagttggta-c 4672
Query: 867 catctttcattttaaactggttaatgggtttt 898
||||||||| ||||||||||||||||| ||||
Sbjct: 4673 catctttcaatttaaactggttaatggttttt 4704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6404
Number of Sequences: 1807
Number of extensions: 6404
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)