BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC08RM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1017 1562 0.0
>3x_Contig1017
Length = 3431
Score = 1562 bits (788), Expect = 0.0
Identities = 843/861 (97%), Gaps = 1/861 (0%)
Strand = Plus / Plus
Query: 46 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cgacggcagctgttagtggttttgtcaaataatcgacatctacaatagccgaatcgttgt 436
Query: 106 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ggcactccacggtaatatggatttcgaaatctttaccgtgatactgggttacatcattat 496
Query: 166 acttccatacaatgtgttcaaacgattcttcctttgccttgtctttaaacttcaaatcag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acttccatacaatgtgttcaaacgattcttcctttgccttgtctttaaacttcaaatcag 556
Query: 226 gcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcagcttgattctctctttgatgtcctttagcaaatgtttttcgatatgctgatgcaaat 616
Query: 286 gcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctcat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gcctcacaaacttctttgaatgtgaattggctgaatccttaatcttttcaggatcctcat 676
Query: 346 gcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaatt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcgattcgtgtagtacaaatggaggatagtacttcaaatgacaatgaacgtgatcaaatt 736
Query: 406 cctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacct 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 cctcatcttcagtttcgttcttaatgaatgtttcgaaatcgttcaaatcttcaaacacct 796
Query: 466 tgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttgg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgacgacttctccggacttggtggtgacattagcaaactttggtcctttatccttcttgg 856
Query: 526 tcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatata 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tcatttctgtgaatattcttctctgatgtagagtgtgtctgtgtgttaaaagttaatata 916
Query: 586 tgtattaactattgcaaattgatgcttgtgtaccgatggtagcactcaagaaaaaggaaa 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 tgtattaactattgcaaattgatgcttgtgtaccgatggtagcactcaagaaaaaggaaa 976
Query: 646 aacacataaacttagggtatacggcaaagaggattagcaaacttggagttaggattttac 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 aacacataaacttagggtatacggcaaagaggattagcaaacttggagttaggattttac 1036
Query: 706 cctctatttatatgcncactttaccttttgtgncttatgtngttttacttcaacacccct 765
||||||||||||||| ||||||||| || ||||||| ||||||| ||||||||||
Sbjct: 1037 cctctatttatatgccacttttacctttgttgtcttatgtgtttttactccaacacccct 1096
Query: 766 taccctaattccacatagatccacccctaattccgcaggagtacaaataaacacaaccag 825
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 1097 aaccctaattccacatagatccaaccctaattccgcagaggtacaaataaacacaaccag 1156
Query: 826 ctagagatagcacaccaccatgtaggcttggttgcacataacacaccaccgaattttttg 885
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 1157 ctagagatagcacaccaccatg-aggctaggttgcacataacacaccaccgaattttttg 1215
Query: 886 ctccccacttttctttctctt 906
|| |||||||||||| |||||
Sbjct: 1216 ctacccacttttcttcctctt 1236
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6903
Number of Sequences: 1807
Number of extensions: 6903
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)