BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC09RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 1449 0.0
>3x_Contig1215
Length = 7125
Score = 1449 bits (731), Expect = 0.0
Identities = 804/826 (97%), Gaps = 2/826 (0%)
Strand = Plus / Plus
Query: 47 agagtatgaaattattatgcgcgttgctactatatacacccgcatgggatgtgattacat 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2441 agagtatgaaattattatgcgcgttgctactatatacacccgcatgggatgtgattacat 2500
Query: 107 agctgtttctcttttgaaggattggaagtttttggaaagtaagaagattgaatccgaaca 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2501 agctgtttctcttttgaaggattggaagtttttggaaagtaagaagattgaatccgaaca 2560
Query: 167 ggttgaaatccctcaaagttcccactcgaagttgacagataacaagattgaagagccggt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 ggttgaaatccctcaaagttcccactcgaagttgacagataacaagattgaagagccggt 2620
Query: 227 cacaacacaaaaggtacgcccaagtctctttgataagtttgactctcaattctcggaaaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 cacaacacaaaaggtacgcccaagtctctttgataagtttgactctcaattctcggaaaa 2680
Query: 287 tacgcgatctgtatcctcgtccacgagtgagtcaaaaagtattctcaaccctacttctag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2681 tacgcgatctgtatcctcgtccacgagtgagtcaaaaagtattctcaaccctacttctag 2740
Query: 347 ggatataaactcttcaaatggacactcaggtaaaagtgcaggctctagtttcaacattct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2741 ggatataaactcttcaaatggacactcaggtaaaagtgcaggctctagtttcaacattct 2800
Query: 407 ggattcttacagaagtgacactcaaaaagtgaccccatctcaagtgccgaatatgctgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2801 ggattcttacagaagtgacactcaaaaagtgaccccatctcaagtgccgaatatgctgga 2860
Query: 467 cagtttcaaggaaaatcaaaaagatacgatacaaaagatacttcccacacaacaaaagtc 526
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2861 cagtttcaaggaaaatcaaaaagatacgatacaaaagaaacttcccacacaacaaaagtc 2920
Query: 527 cccattggatgattatcaggcaagtactaataaaccattcgttccgcagcaacacttaca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2921 cccattggatgattatcaggcaagtactaataaaccattcgttccgcagcaacacttaca 2980
Query: 587 aaattcaaagcccaaaaagacagcgaagcctagaagtttattagatgattttatataaag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2981 aaattcaaagcccaaaaagacagcgaagcctagaagtttattagatgattttatataaag 3040
Query: 647 gtaaaaggaatgaatagcatcccttatcagttaaagaatttacctatgcttttnttctct 706
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct: 3041 gtaaaaggaatgaatagcatccctaatcagttaaagaatttacctatgctttttttc-ct 3099
Query: 707 tctttcgagatcgctcgcgatttttctctctgggatatctattttctgctcgacgttctt 766
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 3100 tctttcgagatcgctcgcgattttcttctctgtaatatctattttctgctcgacgttctt 3159
Query: 767 atccttgggaactggctttgcgcttgtcttattgttcgtgagagcgggtttaaatctatt 826
||||| |||||||| ||||||||| |||||| || |||||||||| || |||||||||
Sbjct: 3160 atcctcgggaactgtctttgcgctgttcttatagtcagtgagagcggcttcaaatctatt 3219
Query: 827 taaagcctaaagacaattgcccctt-ttaagtttgcctttggcttg 871
||||| |||||||||||||||||| |||||| |||||||| ||||
Sbjct: 3220 caaagcataaagacaattgccccttcttaagtatgcctttgccttg 3265
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6720
Number of Sequences: 1807
Number of extensions: 6720
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)