BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC10FM1.SCF screened BAC_end
(1026 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1412 876 0.0
>3x_Contig1412
Length = 7639
Score = 876 bits (442), Expect = 0.0
Identities = 501/514 (97%), Gaps = 5/514 (0%)
Strand = Plus / Plus
Query: 120 tgagctttaacgtctacaatctatggatgaagaagctacgtaaaaaccttgaaaaaattg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 tgagctttaacgtctacaatctatggatgaagaagctacgtaaaaaccttgaaaaaattg 4585
Query: 180 ccgttccagcagttgttgtttcacagtcactaccagggtttgttgttcctgaaccatctc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 ccgttccagcagttgttgtttcacagtcactaccagggtttgttgttcctgaaccatctc 4645
Query: 240 agttccttcagaaattcttacagaacagctcaacctataaaatggatgatgttttaacat 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4646 agttcctccagaaattcttacagaacagctcaacctataaaatggatgatgttttaacat 4705
Query: 300 ttttcaacaatatttattgggcaatgaagtcgtacgatattgaaatggaagtctttgaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 ttttcaacaatatttattgggcaatgaagtcgtacgatattgaaatggaagtctttgaag 4765
Query: 360 acgttatcacgaacctattaaaattactggatgctttatgctttaatgatttgattctaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4766 acgttatcacgaacctattaaaattactggatgctttatgctttaatgatttgattctaa 4825
Query: 420 gaaagaatttcttatcgtggaaacgtggtttgcaattaaattataatgtcacaagaattg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4826 gaaagaatttcttatcgtggaaacgtggtttgcaattaaattataatgtcacaagaatcg 4885
Query: 480 aagaatggtgtaaaagccatcacatttctgaagtaagtgtatgtctttaacatattctcc 539
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4886 aagaatggtgtaaaagccaccacatttctgaagtaagtgtatgtcttcaacatattctcc 4945
Query: 540 aagcggcaaagttacttacagctaaaaaagcgttattgttgcctatgttgatatcatctt 599
||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||| |
Sbjct: 4946 aagcggcaaagttac-tacagctaaaaaagcg-tattgttgccgatattgatatcatc-t 5002
Query: 600 gggacaatttgttactgccttaaaacctatccaa 633
||||| || ||| |||||| ||||||||||||||
Sbjct: 5003 gggac-atctgtaactgcc-taaaacctatccaa 5034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,128
Number of Sequences: 1807
Number of extensions: 17128
Number of successful extensions: 222
Number of sequences better than 1.0e-20: 1
length of query: 1026
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1010
effective length of database: 10,329,639
effective search space: 10432935390
effective search space used: 10432935390
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)