BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC10RM1.SCF screened BAC_end
(956 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig488 1160 0.0
>3x_Contig488
Length = 1926
Score = 1160 bits (585), Expect = 0.0
Identities = 588/589 (99%)
Strand = Plus / Minus
Query: 44 cactggctgggataatgcgtcgctgtcaagttctaatcggtctccacctggtaacggacc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 cactggctgggataatgcgtcgctgtcaagttctaatcggtctccacctggtaacggacc 530
Query: 104 ggatagtaaaaatacaatcggattagaacctctaagtaccatgaaacctatcacacccaa 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 ggatagtaaaaatacaatcggattagaacctctaagtaccatgaaacctatcacacccaa 470
Query: 164 gacgaggactaaagtcggtgaagttttcattccgcttacggaatacgtcccaacgaatat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gacgaggactaaagtcggtgaagttttcattccgcttacggaatacgtcccaacgaatat 410
Query: 224 tgcttcttcagaggaccaagccgatcacatcaatccacttctcatgggagagcacgtatc 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tgcttcttcagaggaccaagccgatcacatcaatccacttctcatgggagagcacgtatc 350
Query: 284 tatctacaatgacgtctctgcagatgccccaaatgtgacgtatttcgcggatacttcgaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tatctacaatgacgtctctgcagatgccccaaatgtgacgtatttcgcggatacttcgaa 290
Query: 344 atctttgagttataatcagttgaaagagcaacggaaggctcttagcgaacaacatttgcg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atctttgagttataatcagttgaaagagcaacggaaggctcttagcgaacaacatttgcg 230
Query: 404 taacaatgtagataacatttcaaagagtggatcaacccaacgcgttccactctcagtcgc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 taacaatgtagataacatttcaaagagtggatcaacccaacgcgttccactctcagtcgc 170
Query: 464 tggccgttcatcttcttttgtgtcaaatatatcttctcatgactccgtggcatcatcaaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tggccgttcatcttcttttgtgtcaaatatatcttctcatgactccgtggcatcatcaaa 110
Query: 524 caatgatttcattagttcattaaacagttcggattctttgtcttctatgcttcatagtgg 583
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 109 caatgatttcattagttcattaaacagttcggattctctgtcttctatgcttcatagtgg 50
Query: 584 taacgctcatcactaccaggatatgcttcatcattctaataatggacgc 632
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 taacgctcatcactaccaggatatgcttcatcattctaataatggacgc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6658
Number of Sequences: 1807
Number of extensions: 6658
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 956
length of database: 10,358,551
effective HSP length: 16
effective length of query: 940
effective length of database: 10,329,639
effective search space: 9709860660
effective search space used: 9709860660
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)