BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC11FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig675 1580 0.0
>3x_Contig675
Length = 2979
Score = 1580 bits (797), Expect = 0.0
Identities = 824/829 (99%), Gaps = 3/829 (0%)
Strand = Plus / Plus
Query: 87 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1677 gagatactgattagcatcagcaaattataagaatacacgcatcaaacaagggaacttgca 1736
Query: 147 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1737 ctgatctctgagttgaaaataagatgacgatggaggaaggtgggttcatcagaaggacaa 1796
Query: 207 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1797 ggcagagcgggaaccggactcgaactgccaagaagaatgtcgtatacattgaatcaagtt 1856
Query: 267 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1857 caggtgagtccgaggatgagccattagtaaagaaagaaattaagagcaataagggtaacg 1916
Query: 327 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1917 caaaagccaatgacaagggcaagtgcaaaaccaagggcacaactaaggcaaaccgaaatt 1976
Query: 387 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1977 tggattcggatttagagtatgatgattctttggttctcttatcggatcagacggacagat 2036
Query: 447 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2037 ctggtgatgaatcaagtgatgagctcaaacgtgaacaggtagtcgaactgatatcctctt 2096
Query: 507 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2097 ctgatgatgatgaacctctgcaaaatggaccgcaaaagaagaagagaaaggctaatggta 2156
Query: 567 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2157 gggctggtggtgccactgctactaagaagaagccgacaaaacccaagatctctcctttcg 2216
Query: 627 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2217 aaagaaacacagcaaagttgtatgctcatcattcagaacttatcgatgtgttcaaaaaat 2276
Query: 687 tacaggaatcgccgatacggcaggtggaaagagctcctcagcctgatggtatggccatta 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2277 tacaggaatcgccgatacggcaggtggaaagagctcctcagcctgatggtatggccatta 2336
Query: 747 gattattaccttttcagttggaaggtttgcactggttgcaacaacaagaagaatcggatt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2337 gattattaccttttcagttggaaggtttgcactggttgcaacaacaagaagaatcggatt 2396
Query: 807 ataatggttggtgtgcttgctgatgagatggttatggngtaaaaccatacaaacgatatg 866
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 2397 ataatgg-tggtgtgcttgctgatgagatgggtatgg-gtaaaaccatacaaacgata-g 2453
Query: 867 ctttgctgatgagcgatatcacaagggaaccatctcttgtcgtggcacc 915
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2454 ctttgctgatgagcgatatcacaaggaaaccatctcttgtcgtggcacc 2502
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7047
Number of Sequences: 1807
Number of extensions: 7047
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)