BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZC11RM1.SCF screened BAC_end (899 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig911 1614 0.0 >3x_Contig911 Length = 4722 Score = 1614 bits (814), Expect = 0.0 Identities = 848/859 (98%), Gaps = 1/859 (0%) Strand = Plus / Minus Query: 41 ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4438 ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 4379 Query: 101 tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4378 tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 4319 Query: 161 catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttaaactctgc 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4318 catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttaaactctgc 4259 Query: 221 agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4258 agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 4199 Query: 281 taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4198 taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 4139 Query: 341 atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4138 atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 4079 Query: 401 aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4078 aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 4019 Query: 461 acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4018 acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 3959 Query: 521 ttcacttgtctgcaatcgaactttagtcgtatcaaaaggctgtccaaccaaaacttgagc 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3958 ttcacttgtctgcaatcgaactttagtcgtatcaaaaggctgtccaaccaaaacttgagc 3899 Query: 581 aataccaccagcagtaccagctaacaaatccttgataacacgagtattatcatgtggaga 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3898 aataccaccagcagtaccagctaacaaatccttgataacacgagtattatcatgtggaga 3839 Query: 641 ctccaaatcgtcaatcaactggggtgttgggaattcttcagtcatcttcgattagtagat 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3838 ctccaaatcgtcaatcaactggggtgttgggaattcttcagtcatcttcgattagtagat 3779 Query: 701 atgattctggagaaatagaggaaaccaaaaggacaaaaaaaagtgatacgatcagccagt 760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3778 atgattctggagaaatagaggaaaccaaaaggacaaaaaaaagtgatacgatcagccagt 3719 Query: 761 gaagatcttttattgctgcgtt-aaaggcttctgntactaacacttattgaatccactac 819 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct: 3718 gaagatcttttattgctgcgttaaaaggcttctgtaactaacacttattgaatccactac 3659 Query: 820 aagtnccttcaataaatctgaatatacagtctgccgntgctcatcgctttcaactctttc 879 |||| | | |||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct: 3658 aagtccttcaaataaatctgaatatacagtctgccgttgctcatcgctttcaactcttcc 3599 Query: 880 cgttatatactcagttggc 898 ||||||||||||||||| Sbjct: 3598 gtttatatactcagttggc 3580 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6040 Number of Sequences: 1807 Number of extensions: 6040 Number of successful extensions: 44 Number of sequences better than 1.0e-20: 1 length of query: 899 length of database: 10,358,551 effective HSP length: 16 effective length of query: 883 effective length of database: 10,329,639 effective search space: 9121071237 effective search space used: 9121071237 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)