BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZC11RM1.SCF screened BAC_end
         (899 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig911                                                         1614   0.0  

>3x_Contig911 
          Length = 4722

 Score = 1614 bits (814), Expect = 0.0
 Identities = 848/859 (98%), Gaps = 1/859 (0%)
 Strand = Plus / Minus

                                                                        
Query: 41   ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 100
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4438 ggctggaatatctttacgttggattccagatttaacctgatgtccaattaaagcctcgta 4379

                                                                        
Query: 101  tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4378 tgtcaagaaatagacaccacaaccatgcgattccctcaacattgtaggggttaacccgcg 4319

                                                                        
Query: 161  catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttaaactctgc 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4318 catcagttgaccgtttaccctcaatttcttaatacaatcgataggacctttaaactctgc 4259

                                                                        
Query: 221  agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4258 agtcgcaccagaaccagtctgagtctgcaatctaattcttatgtgttcaattggggaggc 4199

                                                                        
Query: 281  taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4198 taaaaacgaattagtgaatccaccagcaacaccacatatgtaatactgaagtaaactcaa 4139

                                                                        
Query: 341  atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4138 atgttgagatgcagcttcatcgaaagtatggaaaaaccgtttcatagcctcgtttacccc 4079

                                                                        
Query: 401  aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4078 aaattgtaaggacacacaggcacctacaccaaccaaaggtgtcaaggtacctttatagaa 4019

                                                                        
Query: 461  acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4018 acccataggaccctcgttcttaatcaaatccttgattactttcactgcatttgtgctagt 3959

                                                                        
Query: 521  ttcacttgtctgcaatcgaactttagtcgtatcaaaaggctgtccaaccaaaacttgagc 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3958 ttcacttgtctgcaatcgaactttagtcgtatcaaaaggctgtccaaccaaaacttgagc 3899

                                                                        
Query: 581  aataccaccagcagtaccagctaacaaatccttgataacacgagtattatcatgtggaga 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3898 aataccaccagcagtaccagctaacaaatccttgataacacgagtattatcatgtggaga 3839

                                                                        
Query: 641  ctccaaatcgtcaatcaactggggtgttgggaattcttcagtcatcttcgattagtagat 700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3838 ctccaaatcgtcaatcaactggggtgttgggaattcttcagtcatcttcgattagtagat 3779

                                                                        
Query: 701  atgattctggagaaatagaggaaaccaaaaggacaaaaaaaagtgatacgatcagccagt 760
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3778 atgattctggagaaatagaggaaaccaaaaggacaaaaaaaagtgatacgatcagccagt 3719

                                                                        
Query: 761  gaagatcttttattgctgcgtt-aaaggcttctgntactaacacttattgaatccactac 819
            |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||
Sbjct: 3718 gaagatcttttattgctgcgttaaaaggcttctgtaactaacacttattgaatccactac 3659

                                                                        
Query: 820  aagtnccttcaataaatctgaatatacagtctgccgntgctcatcgctttcaactctttc 879
            |||| | |  |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct: 3658 aagtccttcaaataaatctgaatatacagtctgccgttgctcatcgctttcaactcttcc 3599

                               
Query: 880  cgttatatactcagttggc 898
              |||||||||||||||||
Sbjct: 3598 gtttatatactcagttggc 3580


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6040
Number of Sequences: 1807
Number of extensions: 6040
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)