BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC12FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig584 741 0.0
3x_Contig1176 567 e-161
>3x_Contig584
Length = 3317
Score = 741 bits (374), Expect = 0.0
Identities = 462/482 (95%), Gaps = 7/482 (1%)
Strand = Plus / Plus
Query: 452 aacgaatatgcgagtttattccaggtttccaatagtaagataacccaccataacctttta 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacgaatatgcgagtttattccaggtttccaatagtaagataacccaccataacctttta 60
Query: 512 cgaaggttcttttcatctttgggtatattccaatccgcacaatcaatatgaagtcccata 571
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaggttcttttcatctttgggtattttccaatccgcacaatcaatatgaagtcccata 120
Query: 572 atgtacgctgtattgattatagagctgaggaaattagcctcaaaaggggtacgatagcct 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgtacgctgtattgattatagagctgaggaaattagcctcaaaaggggtacgatagcct 180
Query: 632 gtgttcttgaaacttataatatggtagaaaataatcatgcatttaagtgttgttagagtt 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgttcttgaaacttataatatggtagaaaataatcatgcatttaagtgttgttagagtt 240
Query: 692 ggggcaatcaattccctattgatttgattccagacgactgtaaagaattcttcttcgaaa 751
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 241 ggggcaatcaattccctattgatttgattccagacgactgtaaagaattcttctccgaaa 300
Query: 752 atgaattgtaagtcgttccccttcat-atatccaaaccccttatcggtatcgatgtatcg 810
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 301 atgaattgtaagtcgttccccttcataatatccaaacccttcatcggtatcgatgtatcg 360
Query: 811 tagt-aaaccatctat-agttcagcgggat-acaacagttacagcattggttctgaaaac 867
|||| ||||||||||| ||| ||||| || |||||||| |||||| ||| |||||||||
Sbjct: 361 tagtaaaaccatctataagtcaagcggtataacaacagtaacagcaatgggtctgaaaac 420
Query: 868 tcaccgtaatcaccctctggacccgatggcattctgatgaggcaaaacacagaattgatg 927
||||||||||||| |||| || |||||| || ||||||||||| ||||||||||||||||
Sbjct: 421 tcaccgtaatcacgctct-gatccgatgtca-tctgatgaggc-aaacacagaattgatg 477
Query: 928 gc 929
||
Sbjct: 478 gc 479
>3x_Contig1176
Length = 5769
Score = 567 bits (286), Expect = e-161
Identities = 317/326 (97%), Gaps = 1/326 (0%)
Strand = Plus / Plus
Query: 87 tatattgcaagtcatcggctatcagtttgaattttaacctcaatataagaatcttggaaa 146
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5444 tatattgcaagtcatcggctatcactttgaattttaacctcaatataagaatcttggaaa 5503
Query: 147 cgacatagcaaagcgtaatgctactataagatacatttgcgtctaacggcaatgtagaat 206
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5504 cgacatatcaaagcgtaatgctactataagatacatttgcgtctaacggcaatgtagaat 5563
Query: 207 attcgttaaacttttcattcaacaaatcatcgtaatgggaaatcttaggatcattcatag 266
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5564 attcgttaaaccatccattcaacaaatcatcgtaatgggaaatcttaggatcattcatag 5623
Query: 267 atatttcgccttggaaaagagttttcaccaggttgcaagtagtacatgtcaagttcacga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5624 atatttcgccttggaaaagagttttcaccaggttgcaagtagtacatgtcaagttcacga 5683
Query: 327 ataaataaaaggagtacacggt-ggaagttgggaaaaaatcatcaatgtcatcgaacatg 385
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 5684 ataaataaaaggagtacacggtcggaaggtgggaaaaaatcatcaatgtcatcgaacatg 5743
Query: 386 ctaaaacagtccactgaagaaagtcc 411
|||| ||||||||||| |||||||||
Sbjct: 5744 ctaacacagtccactgtagaaagtcc 5769
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6321
Number of Sequences: 1807
Number of extensions: 6321
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 2
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)