BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZC12RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1449 0.0
3x_Contig352 176 5e-44
>3x_Contig1475
Length = 10676
Score = 1449 bits (731), Expect = 0.0
Identities = 763/770 (99%), Gaps = 4/770 (0%)
Strand = Plus / Plus
Query: 48 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9886 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 9945
Query: 108 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9946 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 10005
Query: 168 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataactacaatgg 227
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 10006 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataacgacaatgg 10065
Query: 228 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10066 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 10125
Query: 288 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10126 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 10185
Query: 348 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10186 tttgtccaaatgatttgttttcatcctttgagatgaatgaagtttctgatttcaatgact 10245
Query: 408 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10246 ttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagctctac 10305
Query: 468 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10306 ccttggtaacagtagatgctgcaaaggcaaggtttaaacgatcaccaacaggggtatctt 10365
Query: 528 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10366 tctcgtaaacttcagaatgagacttggcgactggaagcgattcaccagttaataaggctt 10425
Query: 588 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10426 catctgtttccaaattaattgattccaagagtctcaaatctgccggcacggtgtcaccga 10485
Query: 648 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgtcattac 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10486 ccttaatgatacaaatatcacccggcactaattcctttgattgaatggtgatgtcattac 10545
Query: 708 catctctgataacgtgagcagatggagtggataggcgatt--cacgagttcattgtctta 765
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 10546 catctctgataacgtgagcagatggagtggata-gcgatttcaacgagttcattgtctta 10604
Query: 766 gaagcattatattcttgatatgcaccgatgacgacngttgatccccacga 815
||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 10605 gaagcattatattcttgatatgcaccgatgacgac-gttgatcccaacga 10653
>3x_Contig352
Length = 1459
Score = 176 bits (89), Expect = 5e-44
Identities = 257/313 (82%)
Strand = Plus / Plus
Query: 48 ccaaagaatccaatttacgaacaataacatttctcgtagccataactttagcacctgctg 107
|||||||||| |||||||||| ||||||| ||| || ||||| |||||||| ||||| |
Sbjct: 985 ccaaagaatctaatttacgaatgataacatgtctagttgccatcactttagcgcctgcag 1044
Query: 108 acatggtgatcgtcaagacgacaaccaacgaagatggaatcatagaaatagcaacacaaa 167
|||||||||| || | || || ||||| || ||||| ||||| |||| || |||||||
Sbjct: 1045 acatggtgattgttagaacaacgaccaatgacgatgggatcattgaaagtgcgacacaaa 1104
Query: 168 tggcatagatcgcaacttgcttgttgaccctatatttttgagtacccataactacaatgg 227
|||||||||| |||||||| ||||| ||| || | ||||||||||||||||| ||||| |
Sbjct: 1105 tggcatagatggcaacttgtttgttcaccttaaacttttgagtacccataacgacaatag 1164
Query: 228 cgaagataacggcaacgacgaacaataaaatagccaattgagacaatttacggtgtaatg 287
|||| || || ||||| ||||| |||| |||||||||||||||||| |||||||| || |
Sbjct: 1165 cgaaaatgactgcaaccacgaataatagaatagccaattgagacaacttacggtgcaagg 1224
Query: 288 gagttccgacattagtaccaaggaaagaaccgatagtctctttcaatgtgatccacaaat 347
| || ||||| | || || ||||| | ||||||| ||| ||||||| ||||| || |
Sbjct: 1225 gggtaccgacgctggttcccaggaacgtgccgatagattctctcaatgtaatccataagt 1284
Query: 348 tttgtccaaatga 360
|| ||||||||||
Sbjct: 1285 ttcgtccaaatga 1297
Score = 121 bits (61), Expect = 3e-27
Identities = 92/101 (91%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 404 gactttgcaatcttaccaatttcagtgttcaaagcggtctttataacaataccagtagct 463
||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 1340 gacttcgctatcttaccaatttcagtgttcaaagctgtctttataacaataccagtcgct 1399
Query: 464 ctacccttggtaacagtagatgctgcaaaggcaaggtttaa 504
|| ||||| ||||| ||||||||||| |||||||||||||
Sbjct: 1400 ctgcccttcgtaactgtagatgctgc-gaggcaaggtttaa 1439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6418
Number of Sequences: 1807
Number of extensions: 6418
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)