BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD01FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1538 0.0
>3x_Contig1265
Length = 8324
Score = 1538 bits (776), Expect = 0.0
Identities = 802/808 (99%), Gaps = 2/808 (0%)
Strand = Plus / Plus
Query: 90 ggttgtcatctgcttatcaataagcttctgatcttgatggatgtaatttaaagtgttgag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2007 ggttgtcatctgcttatcaataagcttctgatcttgatggatgtaatttaaagtgttgag 2066
Query: 150 cggagcaaccagaggtattaggtctttttctgtgtttgttgaattcgacatacctgtatg 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2067 cggagcaaccagaggtattaggtctttttctgtgtttgttgaattcgacatacctgtatg 2126
Query: 210 agagtcgcagaactgctttcactaatcagtggattttgtttgatgaagtaaaatggccta 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2127 agagtcgcagaactgctttcactaatcagtggattttgtttgatgaagtaaaatggccta 2186
Query: 270 cagtatttgcttatcattccaagaaatgttcacaaagtgggggagatctcagacattcga 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2187 cagtatttgcttatcattccaagaaatgttcacaaagtgggggagatctcagacattcga 2246
Query: 330 actactttcttattgaatacgaccaaatatattttcttataatactttttgaccatagat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 actactttcttattgaatacgaccaaatatattttcttataatactttttgaccatagat 2306
Query: 390 gttcaatatgaactcgacggtggcttacaaatagactgatttcgatcaactcttattggt 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2307 gttcaatatgaactcgacggtggcttacaaatagactgatttcgatcaactcttattggt 2366
Query: 450 gaagactgcttggtaagcaacttactaatatatactttctgttctatctacagtaaagag 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2367 gaagactgcttggtaagcaacttactaatatatactttctgttctatctacagtaaagag 2426
Query: 510 ggcactgtttggatccagtttgggaaatagctgatgcatttaaaaggttatcaaatgtat 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 ggcactgtttggatccagtttgggaaatagctgatgcatttaaaaggttatcaaatgtat 2486
Query: 570 gtgtgcgttgtcggatcttaagtattgcattcgactagaaaaaattaagccaccttaata 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2487 gtgtgcgttgtcggatcttaagtattgcattcgactagaaaaaattaagccaccttaata 2546
Query: 630 gcactagtgacaggtgagaaacgaccagcaggtttttctggcagtactgtttccttttgg 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2547 gcactagtgacaggtgagaaacgaccagcaggtttttctggcagtactgtttccttttgg 2606
Query: 690 tacatgctgaaaggtgtatggatatacaattccagcacgaacgttaccggatattttcga 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2607 tacatgctgaaaggtgtatggatatacaattccagcacgaacgttaccggatattttcga 2666
Query: 750 attcttgcccaatgctgccatgatttgttcacacgctaccagagatcgacactggnaaag 809
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 2667 attcttgcccaatgctgccatgattggttcacacgctaccagagatcgacactgg-aaag 2725
Query: 810 tgatacaatcaaaaacacattttggttatttctcattgcacttgaaaggcaataatgatt 869
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2726 tgatacaatcaaaaacacattttggttatttctcaatgcacttgaaaggcaataatgatt 2785
Query: 870 cgg-acagctcttagaccttagtggcta 896
||| |||||||| ||||||||||||||
Sbjct: 2786 cggtacagctctaggaccttagtggcta 2813
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5791
Number of Sequences: 1807
Number of extensions: 5791
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)