BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC50ZD01RM1.SCF screened BAC_end
         (905 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1216                                                        1578   0.0  

>3x_Contig1216 
          Length = 5132

 Score = 1578 bits (796), Expect = 0.0
 Identities = 845/856 (98%), Gaps = 4/856 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   cttgagccccgttatatttctgaagttttggtcgtacgatagttcacggaatacttcata 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4154 cttgagccccgttatatttctgaagttttggtcgtacgatagttcacggaatacttcata 4213

                                                                        
Query: 109  ctcgtatttgagttgcgactttaatgtctctagctgaataaattcatactgtgatgtaac 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4214 ctcgtatttgagttgcgactttaatgtctctagctgaataaattcatactgtgatgtaac 4273

                                                                        
Query: 169  accatcgccactcggtgaagaaaggaagaatagaaggattataataaaaaatataatcct 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4274 accatcgccactcggtgaagaaaggaagaatagaaggattataataaaaaatataatcct 4333

                                                                        
Query: 229  actgttatctgtactcatattgggggttggggtcagcgcagtagctctggcggttgttgt 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4334 actgttatctgtactcatattgggggttggggtcagcgcagtagctctggcggttgttgt 4393

                                                                        
Query: 289  cttcccctaggatcgactattgtcagttatttaaagggtttcgatcttaacatttgatat 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4394 cttcccctaggatcgactattgtcagttatttaaagggtttcgatcttaacatttgatat 4453

                                                                        
Query: 349  tagaaaaaaatgtatttaaatgttttagctacagaaagaataagtgtgctgactatgaat 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4454 tagaaaaaaatgtatttaaatgttttagctacagaaagaataagtgtgctgactatgaat 4513

                                                                        
Query: 409  tgtacgaggaagaaaattacttaacggtattactcgtagcctacgcttcagaaaaggacg 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4514 tgtacgaggaagaaaattacttaacggtattactcgtagcctacgcttcagaaaaggacg 4573

                                                                        
Query: 469  aatttatgaattgagctatcaacagttagaacaaagtatttgaacatggtgcattgttat 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4574 aatttatgaattgagctatcaacagttagaacaaagtatttgaacatggtgcattgttat 4633

                                                                        
Query: 529  aggttcaaagaccaattccttagtgcagataatagaattttgagttttgttattaatgtc 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4634 aggttcaaagaccaattccttagtgcagataatagaattttgagttttgttattaatgtc 4693

                                                                        
Query: 589  ggggttgagtgttaaatacttgttatatataattcagcgaaacaactactttgcattgtt 648
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4694 ggggttgagtgttaaatacttgttatatataattcagcgaaacaactactttgcattgtt 4753

                                                                        
Query: 649  gaagctcaggctacgagttcatcataagtgtggcatgtgtctttttctttgatatgcgac 708
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4754 gaagctcaggctacgagttcatcataagtgtggcatgtgtctttttctttgatatgcgac 4813

                                                                        
Query: 709  gtaattccaagtattaatgtttgttaacgttcattaaagctcagtgctctaatattttgt 768
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 4814 gtaattccaagtattaatgtttgttaacgttcattaaagctcagtgctctaatatttgta 4873

                                                                        
Query: 769  agttaccagtaataacaacgttctccaaaacagatccattagggatattcaattctttga 828
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 4874 agttaccagtaataacaacgttctccaaaacagatccattagggata-tcaattctatga 4932

                                                                        
Query: 829  ccttcagagcaaaccatgatcacaggttcccttaagaagtgacggtttttacccaaataa 888
            |||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct: 4933 ccttcagagcaaacaatgatcaca-gttcccttaag-agtgac-gtttttacccaaataa 4989

                            
Query: 889  ccattaccagttatgg 904
             |||||||||| ||||
Sbjct: 4990 acattaccagtaatgg 5005


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7063
Number of Sequences: 1807
Number of extensions: 7063
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)