BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC50ZD01RM1.SCF screened BAC_end (905 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1216 1578 0.0 >3x_Contig1216 Length = 5132 Score = 1578 bits (796), Expect = 0.0 Identities = 845/856 (98%), Gaps = 4/856 (0%) Strand = Plus / Plus Query: 49 cttgagccccgttatatttctgaagttttggtcgtacgatagttcacggaatacttcata 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4154 cttgagccccgttatatttctgaagttttggtcgtacgatagttcacggaatacttcata 4213 Query: 109 ctcgtatttgagttgcgactttaatgtctctagctgaataaattcatactgtgatgtaac 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4214 ctcgtatttgagttgcgactttaatgtctctagctgaataaattcatactgtgatgtaac 4273 Query: 169 accatcgccactcggtgaagaaaggaagaatagaaggattataataaaaaatataatcct 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4274 accatcgccactcggtgaagaaaggaagaatagaaggattataataaaaaatataatcct 4333 Query: 229 actgttatctgtactcatattgggggttggggtcagcgcagtagctctggcggttgttgt 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4334 actgttatctgtactcatattgggggttggggtcagcgcagtagctctggcggttgttgt 4393 Query: 289 cttcccctaggatcgactattgtcagttatttaaagggtttcgatcttaacatttgatat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4394 cttcccctaggatcgactattgtcagttatttaaagggtttcgatcttaacatttgatat 4453 Query: 349 tagaaaaaaatgtatttaaatgttttagctacagaaagaataagtgtgctgactatgaat 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4454 tagaaaaaaatgtatttaaatgttttagctacagaaagaataagtgtgctgactatgaat 4513 Query: 409 tgtacgaggaagaaaattacttaacggtattactcgtagcctacgcttcagaaaaggacg 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4514 tgtacgaggaagaaaattacttaacggtattactcgtagcctacgcttcagaaaaggacg 4573 Query: 469 aatttatgaattgagctatcaacagttagaacaaagtatttgaacatggtgcattgttat 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4574 aatttatgaattgagctatcaacagttagaacaaagtatttgaacatggtgcattgttat 4633 Query: 529 aggttcaaagaccaattccttagtgcagataatagaattttgagttttgttattaatgtc 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4634 aggttcaaagaccaattccttagtgcagataatagaattttgagttttgttattaatgtc 4693 Query: 589 ggggttgagtgttaaatacttgttatatataattcagcgaaacaactactttgcattgtt 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4694 ggggttgagtgttaaatacttgttatatataattcagcgaaacaactactttgcattgtt 4753 Query: 649 gaagctcaggctacgagttcatcataagtgtggcatgtgtctttttctttgatatgcgac 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4754 gaagctcaggctacgagttcatcataagtgtggcatgtgtctttttctttgatatgcgac 4813 Query: 709 gtaattccaagtattaatgtttgttaacgttcattaaagctcagtgctctaatattttgt 768 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4814 gtaattccaagtattaatgtttgttaacgttcattaaagctcagtgctctaatatttgta 4873 Query: 769 agttaccagtaataacaacgttctccaaaacagatccattagggatattcaattctttga 828 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 4874 agttaccagtaataacaacgttctccaaaacagatccattagggata-tcaattctatga 4932 Query: 829 ccttcagagcaaaccatgatcacaggttcccttaagaagtgacggtttttacccaaataa 888 |||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| Sbjct: 4933 ccttcagagcaaacaatgatcaca-gttcccttaag-agtgac-gtttttacccaaataa 4989 Query: 889 ccattaccagttatgg 904 |||||||||| |||| Sbjct: 4990 acattaccagtaatgg 5005 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7063 Number of Sequences: 1807 Number of extensions: 7063 Number of successful extensions: 42 Number of sequences better than 1.0e-20: 1 length of query: 905 length of database: 10,358,551 effective HSP length: 16 effective length of query: 889 effective length of database: 10,329,639 effective search space: 9183049071 effective search space used: 9183049071 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)