BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD02FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1564 0.0
>3x_Contig1731
Length = 24233
Score = 1564 bits (789), Expect = 0.0
Identities = 832/841 (98%), Gaps = 4/841 (0%)
Strand = Plus / Plus
Query: 86 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20923 tgaagtctttcatcaaggaaaaatacccagttggtgaaaacttcgacacccaattcaacc 20982
Query: 146 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20983 tggctgtcaagagagggttggagactgagttcttctctcaaccaaagggacctgctggtt 21042
Query: 206 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21043 ctatcaaattggtgaaaaaaccaaaggctgagtccaagaaggcagctccttctgctgtta 21102
Query: 266 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21103 agaaatcttctactaccaagaagccagctgccaccaccaagaagagctctactagttcaa 21162
Query: 326 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21163 aaaaggcttctgctggtaaggtcgtcaagaaggagtcttcaaagaagaccactgctaaga 21222
Query: 386 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21223 aagcagctaccaagaaggctcctgctaagaagactgccgttaagaagtccaagaaataaa 21282
Query: 446 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21283 gttaatcaaatttcgaatcactttatttttttacctcctgtgaatatcgattcacctaac 21342
Query: 506 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21343 ttcttaatgcgtgtgttgtattttactaccttcctttgatacttctgtctacccttaata 21402
Query: 566 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21403 attcagttcaaatcggttatttttgtgttatttaaatcaattataccctttatcaccact 21462
Query: 626 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21463 ctattattttcttccttgaaaaattgtctttctgttgaaatatattccaccccttcctgt 21522
Query: 686 cctttaccctacttattccttttgactacattcaccatcatttattccaacccaaacctc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21523 cctttaccctacttattccttttgactacattcaccatcatttattccaacccaaacctc 21582
Query: 746 ctatctcttactgtggtctctctgttactcctcctttcatcttttctttttactcacggg 805
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 21583 ctatctcttactgtggtctctctgttactcctcctttcatcttttcttttaactcacgga 21642
Query: 806 aattttaaaatgagaac-caccacttagattattgactagtgt-atattaacattagccg 863
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 21643 aattttaaaatgagaacacaccacttagattattgactagtgtaatattaacattag-cg 21701
Query: 864 gatttcttaatcaattcgctcttctttattgatatctcgaataaaaacatttaaaaattt 923
||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 21702 gatttctaaatcaatccgctcttctttattgatatctcgaataaaatca-ttaaaaattt 21760
Query: 924 c 924
|
Sbjct: 21761 c 21761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7920
Number of Sequences: 1807
Number of extensions: 7920
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)