BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD03FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1453 291 1e-78
>3x_Contig1453
Length = 8444
Score = 291 bits (147), Expect = 1e-78
Identities = 196/211 (92%), Gaps = 1/211 (0%)
Strand = Plus / Minus
Query: 87 gcataaatatgttaggaaa-aggaaaatatttgagcttctaaaacgactcttaactgtct 145
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gcataaatatgttaggaaataggaaaatatttgagcttctaaaacgactcttaactgtct 479
Query: 146 attcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 attcccagaatcaatccggagaactatttgattactaagtttaaatgcttctagacaagt 419
Query: 206 ttcaactgcccatgagggggggcataccaatgtgcaagtccaagttttctagtcatctct 265
||||||||||||||||||| ||||||||| | ||| ||||| ||||||| ||||||||
Sbjct: 418 ttcaactgcccatgaggggtttcataccaattttcaattccaatttttctattcatctct 359
Query: 266 ttcatttttctaatttttgatagcaaaatta 296
|||| | || ||||||| ||| ||||||||
Sbjct: 358 ctcatctatcaaattttttatatcaaaatta 328
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7400
Number of Sequences: 1807
Number of extensions: 7400
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)