BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD03RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1675 1604 0.0
>3x_Contig1675
Length = 13954
Score = 1604 bits (809), Expect = 0.0
Identities = 886/902 (98%), Gaps = 8/902 (0%)
Strand = Plus / Plus
Query: 48 agtgtcgttttgaacatacatttttgctgcggtaacaaactggttaccagggcctaagat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11113 agtgtcgttttgaacatacatttttgctgcggtaacaaactggttaccagggcctaagat 11172
Query: 108 ttt-gtccactttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcac 166
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11173 ttttgtccactttaggaacggattcagtaccgtaggccattgcagcaatagcttgtgcac 11232
Query: 167 cacctgctaatacgatctttgaagcaccgactttacttgcaacataaacaacttcaggag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11233 cacctgctaatacgatctttgaagcaccgactttacttgcaacataaacaacttcaggag 11292
Query: 227 aaactctaccgtcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaa 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11293 aaactctaccgtcagactttcttggaggtgatgcgaaaacaatttctttacatccagcaa 11352
Query: 287 cctgggccggtacacctaacataagcgcagtacttggtaagattgctgtaccacccggaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11353 cctgggccggtacacctaacataagcgcagtacttggtaagattgctgtaccacccggaa 11412
Query: 347 tgtatagaccaaccttttcgataggtctagggaacctagagcagacaacacctggttgag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11413 tgtatagaccaaccttttcgataggtctagggaacctagagcagacaacacctggttgag 11472
Query: 407 tttcgacatctagggtttcactttgcatttgagcagcgtggaacttttttacattttcaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11473 tttcgacatctagggtttcactttgcatttgagcagcgtggaacttttttacattttcaa 11532
Query: 467 tagacaggtccaaagcatctcttagttcatcagtcaatccatcaaggtattcttctggat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11533 tagacaggtccaaagcatctcttagttcatcagtcaatccatcaaggtattcttctggat 11592
Query: 527 aaggtgcctccaaaactggtgtttctaattggacaccatcgaacttagctgtcaattcaa 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11593 aaggtgcctccaaaactggtgtttctaattggacaccatcgaacttagctgtcaattcaa 11652
Query: 587 ctagcgctttgtcaccgttcttaataacgttttcaatgattgggttaaccaggttcataa 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11653 ctagcgctttgtcaccgttcttaataacgttttcaatgattgggttaaccaggttcataa 11712
Query: 647 tttcagctgttttctgaattggtcttgtgactgccttttcgacggcagctttgtcactag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11713 tttcagctgttttctgaattggtcttgtgactgccttttcgacggcagctttgtcactag 11772
Query: 707 cggaaacaacgttaagaacattttttccatcttcttcatggacagcaactggttccttct 766
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11773 cgg-aacaacgttaagaacaatttttccatcttcttcatggacagcaactggttccttct 11831
Query: 767 tgag-aacttangtttggcgtcaccttttcttcttgtgattttcaagtgttttggtattt 825
|||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11832 tgagaaacttaggtttggcgtcaccttttcttcttgtgattttcaagtg-tttggtattt 11890
Query: 826 aggttacgctcaacatncctctaatgatacngccattggcaactagccctanccatagca 885
|||||||||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct: 11891 aggttacgctcaacat-cctctaatgatac-gccattggcaactag-cctagccatagca 11947
Query: 886 aagtnaaattaatcagcacattcccaagctatatctttttttataaacgtcttcggtaag 945
|||| |||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 11948 aagtaaaataaatcagcacattcccaagctatatc-ttttttatcaacagcttcggtaag 12006
Query: 946 tt 947
||
Sbjct: 12007 tt 12008
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6246
Number of Sequences: 1807
Number of extensions: 6246
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)