BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC50ZD04FM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1277 0.0
>3x_Contig1719
Length = 15804
Score = 1277 bits (644), Expect = 0.0
Identities = 683/695 (98%), Gaps = 4/695 (0%)
Strand = Plus / Minus
Query: 87 cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cagcatatttgagtgatacgcactcaaattacaaccaataggagaaccaatgggcgttaa 640
Query: 147 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 taacagtatagaccatccccttaacttttcacaagcctactgctcaaatgcattgggcca 580
Query: 207 atttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaata 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atttccgatgaactaagccaagcctttttcctttctgtacgcttttgccgatgcacaata 520
Query: 267 caatttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caatttcaaaaaaattcaaactttggacaatttcaatttcatcactttggaagggcatgt 460
Query: 327 aaaaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aaaaggggcaaacttgaaaggcaactgaagcggtatatatatctaatcagcgtgtcaacg 400
Query: 387 agttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agttgtctgttagagcaaatctgaacttaaattaatctttcgaaggacaaacaagcgtct 340
Query: 447 ttgtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttgtcgagggaaagaaagttaatttattataagggcaaagagagagagcactcaaataaa 280
Query: 507 aaacacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaacacgaagaacgtgaatttaaacagataaaaagcgttaagttttgaagtttagagcgt 220
Query: 567 atacagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 atacagcgaataagaaagcaaataacaatcaatatattttccccctagagagtcatgtcg 160
Query: 627 ttcaaaggttntacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaac 686
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ttcaaaggttttacaaaagctgtcgccagagcaccccagtcttttaggcaaaaactgaac 100
Query: 687 atgggtcagcagactgttgatcctgtttatgaagatgctgatcgtcngttcagggattgg 746
|||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| | |
Sbjct: 99 atgggtcagcagactgttgatcctgtttatgaggatgctgatcgtcgtttcaaggaattg 40
Query: 747 naatcg---aacgaagaag-tgagcgatgagtcaa 777
||||| |||||||||| |||||||||||||||
Sbjct: 39 gaatcggaaaacgaagaagttgagcgatgagtcaa 5
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6026
Number of Sequences: 1807
Number of extensions: 6026
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)